Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2514 215 1e-53 >seq2514 Length=157033 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| | |||| ||||||| | || || ||||||||||||||||||||| Sbjct 102768 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 102709 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 102708 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 102649 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 102648 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 102589 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 102588 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 102545 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 102544 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 102486 Query 300 CCACT 304 ||||| Sbjct 102485 CCACT 102481 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| | |||| ||||||| | || || ||||||||||||||||||||| Sbjct 139395 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 139454 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 139455 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 139514 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 139515 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 139574 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 139575 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 139618 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 139619 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 139677 Query 300 CCACT 304 ||||| Sbjct 139678 CCACT 139682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998374900224