Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq14 82.4 9e-14 seq1505 80.6 3e-13 seq17 80.6 3e-13 seq9 80.6 3e-13 seq15 78.8 1e-12 seq8 77.0 4e-12 seq392 75.2 1e-11 >seq14 Length=17716633 Score = 82.4 bits (90), Expect = 9e-14 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 16976743 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 16976801 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || | |||||| ||||||||||| ||||||||| || |||| Sbjct 16976802 GGCTTACTTTGAGCACTCTAATTTCTTCAAGGTAACAGCACTGG 16976845 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 17521725 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 17521667 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 17521666 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 17521629 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 17563578 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 17563520 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 17563519 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 17563482 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 17671754 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 17671696 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 17671695 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 17671658 >seq1505 Length=4869 Score = 80.6 bits (88), Expect = 3e-13 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GC 68 || |||||| |||||| || | |||||| | |||| |||||||||||||| | | || Sbjct 1421 AAGCCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGC 1363 Query 69 GTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 ||| || |||||||| ||||||||||| |||| |||| || Sbjct 1362 GTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 1322 >seq17 Length=14661173 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 2262266 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 2262208 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 2262207 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 2262170 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 2281014 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 2280956 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 2280955 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 2280918 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 2320038 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 2319980 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 2319979 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 2319942 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 2332287 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 2332229 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 2332228 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 2332191 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 2369186 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 2369128 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 2369127 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 2369090 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 2370544 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 2370486 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 2370485 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 2370448 Score = 77.0 bits (84), Expect = 4e-12 Identities = 73/91 (80%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 2346485 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 2346427 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAG 102 || |||||||| ||||||||||| ||||| Sbjct 2346426 GGCTTGCTTTGAGCACTCTAATTTCTTCAAG 2346396 Score = 77.0 bits (84), Expect = 4e-12 Identities = 73/91 (80%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 2359080 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 2359022 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAG 102 || |||||||| ||||||||||| ||||| Sbjct 2359021 GGCTTGCTTTGAGCACTCTAATTTCTTCAAG 2358991 Score = 75.2 bits (82), Expect = 1e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 16 ACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGC 74 ||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| || Sbjct 2308926 ACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTAGGC 2308868 Query 75 CTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 |||||||| ||||||||||| |||| |||| || Sbjct 2308867 TTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 2308833 >seq9 Length=12942059 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 113751 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 113809 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 113810 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 113847 Score = 77.0 bits (84), Expect = 4e-12 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAA 92 |||||| | |||| |||||||||||||| | | ||||| || |||||||| |||||||| Sbjct 332381 TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTCTAA 332440 Query 93 TTTTCTCAAGGTAAAAG 109 ||| |||| ||||||| Sbjct 332441 TTTCTTCAAAGTAAAAG 332457 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| | | |||||| | |||| |||||||||||||| | | ||||| Sbjct 234030 CCAACACAATAGGATCAAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 234088 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 234089 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 234126 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC-GGGCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 318300 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 318358 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||| | |||| |||| || Sbjct 318359 GGCTTGCTTTGAGCACTCTAATCTCTTCAAAGTAACAG 318396 >seq15 Length=15134944 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTAT-TCGGGCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 9339827 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCTAGAGCGTA 9339769 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 ||| |||||||| |||| |||||| |||| |||| Sbjct 9339768 AGCTTGCTTTGAGCACTTTAATTTCTTCAAAGTAA 9339734 >seq8 Length=18835763 Score = 77.0 bits (84), Expect = 4e-12 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 16160963 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 16161021 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTA 105 || |||||||| ||||||||||| |||| ||| Sbjct 16161022 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTA 16161055 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| | |||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 16192527 CCAACACAGTAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 16192585 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 16192586 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 16192623 >seq392 Length=17510 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| | | |||||| | |||| |||||||||||||| | | ||||| Sbjct 4011 CCAACACAATAGGATCAAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 3953 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 3952 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 3915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595185504276