Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2514 120 6e-25 >seq2514 Length=157033 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 106320 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 106379 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 106380 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACC------TTTCAAA 106432 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| ||| |||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 106433 C--TGC-TGCCGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 106489 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 106490 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 106549 Query 249 CCT 251 ||| Sbjct 106550 CCT 106552 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 135843 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 135784 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 135783 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACC------TTTCAAA 135731 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| ||| |||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 135730 C--TGC-TGCCGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 135674 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 135673 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 135614 Query 249 CCT 251 ||| Sbjct 135613 CCT 135611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918376911424