Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2514 203 1e-49 >seq2514 Length=157033 Score = 203 bits (224), Expect = 1e-49 Identities = 393/568 (69%), Gaps = 19/568 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 108681 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 108622 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 108621 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 108563 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 108562 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 108503 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCC-ACAACCACTAGCGTGGCCGCATCA 236 | | ||||||||||| ||| ||| ||| || || | | || | | || Sbjct 108502 TAGCTCTTCCAGAGTGGTATCTCACTGACGGCTCGGACCCCCCCCGAAGGGGGC-CTTCT 108444 Query 237 TAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 | | || ||||||| || | || || || | || |||||| ||| | | |||||| Sbjct 108443 TCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTGAA 108386 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| |||| | || | | ||||||| || | | ||| Sbjct 108385 GCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATT 108326 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAA 412 |||||| |||| | ||||||| | || |||||||||| ||||||| |||||||| Sbjct 108325 TCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAA 108267 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 108266 CTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCG 108207 Query 473 GGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCC 532 ||||||| | ||| ||| || || | | |||| | ||| ||||||| Sbjct 108206 GGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTCC 108153 Query 533 AGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| ||||||||||||| || |||| Sbjct 108152 GGCACTGGGCAGGCGTCAGCCCCCATAC 108125 Score = 203 bits (224), Expect = 1e-49 Identities = 393/568 (69%), Gaps = 19/568 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 133482 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 133541 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 133542 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 133600 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 133601 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 133660 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCC-ACAACCACTAGCGTGGCCGCATCA 236 | | ||||||||||| ||| ||| ||| || || | | || | | || Sbjct 133661 TAGCTCTTCCAGAGTGGTATCTCACTGACGGCTCGGACCCCCCCCGAAGGGGGC-CTTCT 133719 Query 237 TAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 | | || ||||||| || | || || || | || |||||| ||| | | |||||| Sbjct 133720 TCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTGAA 133777 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| |||| | || | | ||||||| || | | ||| Sbjct 133778 GCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATT 133837 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAA 412 |||||| |||| | ||||||| | || |||||||||| ||||||| |||||||| Sbjct 133838 TCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAA 133896 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 133897 CTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCG 133956 Query 473 GGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCC 532 ||||||| | ||| ||| || || | | |||| | ||| ||||||| Sbjct 133957 GGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTCC 134010 Query 533 AGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| ||||||||||||| || |||| Sbjct 134011 GGCACTGGGCAGGCGTCAGCCCCCATAC 134038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702357201664