Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2514 123 5e-26 >seq2514 Length=157033 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 102870 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 102822 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 102821 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 102769 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| ||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 102768 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 102709 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 102708 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 102649 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 102648 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 102610 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 139293 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 139341 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 139342 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 139394 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| ||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 139395 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 139454 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 139455 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 139514 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 139515 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 139553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068773130368