Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq17 100 5e-19 seq14 100 5e-19 seq8 100 5e-19 seq1 100 5e-19 seq9 96.9 6e-18 seq15 91.5 2e-16 seq638 80.6 4e-13 >seq17 Length=14661173 Score = 100 bits (110), Expect = 5e-19 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2313507 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2313564 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 2313565 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2313624 Query 121 GA 122 || Sbjct 2313625 GA 2313626 Score = 100 bits (110), Expect = 5e-19 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2324613 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2324670 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 2324671 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2324730 Query 121 GA 122 || Sbjct 2324731 GA 2324732 Score = 96.9 bits (106), Expect = 6e-18 Identities = 97/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2265119 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 2265175 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 2265176 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2265235 Query 121 GA 122 || Sbjct 2265236 GA 2265237 Score = 96.9 bits (106), Expect = 6e-18 Identities = 97/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2274931 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 2274987 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 2274988 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2275047 Query 121 GA 122 || Sbjct 2275048 GA 2275049 Score = 96.9 bits (106), Expect = 6e-18 Identities = 97/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2293666 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 2293722 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 2293723 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2293782 Query 121 GA 122 || Sbjct 2293783 GA 2293784 Score = 96.9 bits (106), Expect = 6e-18 Identities = 97/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2302074 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAA-AGCCAGT 2302130 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 2302131 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2302190 Query 121 GA 122 || Sbjct 2302191 GA 2302192 Score = 96.9 bits (106), Expect = 6e-18 Identities = 97/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2338524 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 2338580 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 2338581 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2338640 Query 121 GA 122 || Sbjct 2338641 GA 2338642 Score = 96.9 bits (106), Expect = 6e-18 Identities = 97/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2351058 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 2351114 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 2351115 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2351174 Query 121 GA 122 || Sbjct 2351175 GA 2351176 Score = 89.7 bits (98), Expect = 8e-16 Identities = 96/122 (79%), Gaps = 5/122 (4%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| | | ||| ||| | ||| || ||| || |||| Sbjct 2363617 GTACGAGAGGAACCGTG--ATTC-GCACAAT-GGTCATCGCGCTTGG-TGAAAAGCCAGT 2363671 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 2363672 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2363731 Query 121 GA 122 || Sbjct 2363732 GA 2363733 >seq14 Length=17716633 Score = 100 bits (110), Expect = 5e-19 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 17516373 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 17516430 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 17516431 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 17516490 Query 121 GA 122 || Sbjct 17516491 GA 17516492 Score = 100 bits (110), Expect = 5e-19 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 17548404 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 17548461 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 17548462 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 17548521 Query 121 GA 122 || Sbjct 17548522 GA 17548523 Score = 96.9 bits (106), Expect = 6e-18 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 17504167 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 17504224 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||||| | ||||||||| || ||||||||||||||||||| Sbjct 17504225 GGCGCGAAGCTACCATGCGTTGGATTATGACTAAACGCCTCTAAGTCAGAAT 17504276 Score = 91.5 bits (100), Expect = 2e-16 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || ||| | | |||| || | ||| || ||| || |||| Sbjct 17486076 GTATGAGAGGAACCGTTGA-TTC-GCACAATTAGTCATCGCGCTTGGTTGAAAAGCCAGT 17486133 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| ||||| ||||||||||||||||||| || | Sbjct 17486134 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAATGCCTCTAAGTCAGAATCCAAGCTA 17486193 Query 121 GA 122 || Sbjct 17486194 GA 17486195 >seq8 Length=18835763 Score = 100 bits (110), Expect = 5e-19 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 16197829 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 16197772 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 16197771 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 16197712 Query 121 GA 122 || Sbjct 16197711 GA 16197710 Score = 100 bits (110), Expect = 5e-19 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 16209781 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 16209724 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 16209723 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 16209664 Query 121 GA 122 || Sbjct 16209663 GA 16209662 Score = 96.9 bits (106), Expect = 6e-18 Identities = 97/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 16156391 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 16156335 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 16156334 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 16156275 Query 121 GA 122 || Sbjct 16156274 GA 16156273 Score = 96.9 bits (106), Expect = 6e-18 Identities = 97/122 (80%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 16167420 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAA-AGCCAGT 16167364 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 16167363 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 16167304 Query 121 GA 122 || Sbjct 16167303 GA 16167302 >seq1 Length=48367220 Score = 100 bits (110), Expect = 5e-19 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 39269619 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 39269676 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 39269677 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 39269736 Query 121 GA 122 || Sbjct 39269737 GA 39269738 >seq9 Length=12942059 Score = 96.9 bits (106), Expect = 6e-18 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 246472 GTACGAGAGGAACCGTTGA-TTC-GTACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 246415 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| ||||||||||||||||| |||||| || | Sbjct 246414 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCCGAATCCGGGCTA 246355 Query 121 GA 122 || Sbjct 246354 GA 246353 Score = 91.5 bits (100), Expect = 2e-16 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| ||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 338352 GTACGAGAGTAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 338295 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||| |||||||||||||||||||||||| || | Sbjct 338294 GGCGCGAAGCTACCGTGCATTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 338235 Query 121 GA 122 || Sbjct 338234 GA 338233 Score = 91.5 bits (100), Expect = 2e-16 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | |||| || | ||| || ||| || |||| Sbjct 378264 GTACGAGAGGAACCGTTGA-TTC-GCACAATTAGTCATCGCGCTTGGTTGAAAAGCCAGT 378321 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||| ||||| || | Sbjct 378322 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAAAATCCGGGCTA 378381 Query 121 GA 122 || Sbjct 378382 GA 378383 >seq15 Length=15134944 Score = 91.5 bits (100), Expect = 2e-16 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || ||| | ||||||||| |||| | | ||| || |||| Sbjct 9363769 GTATGAGAGGAACCGTTGA-TTC-GCATAATTGGTCTTTGTGCTTAGTTGAAAAGCCAGT 9363712 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | | ||||||||| |||||| |||||| ||||||||||| || | Sbjct 9363711 GGTGCGAAGCTACCGTGCGTTGGATTATGACTGAACACCTCTATGTCAGAATCCAGGCTA 9363652 Query 121 GA 122 || Sbjct 9363651 GA 9363650 >seq638 Length=11486 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | | ||||||||| ||||||||||||||||||||||| Sbjct 398 AGCCAGTGGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATC 339 Query 114 CATGCCAGA 122 | || ||| Sbjct 338 CGGGCTAGA 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819180048896