Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18]
2,514 sequences; 417,286,671 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq17 100 5e-19
seq14 100 5e-19
seq8 100 5e-19
seq1 100 5e-19
seq9 96.9 6e-18
seq15 91.5 2e-16
seq638 80.6 4e-13
>seq17
Length=14661173
Score = 100 bits (110), Expect = 5e-19
Identities = 97/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 2313507 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2313564
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 2313565 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2313624
Query 121 GA 122
||
Sbjct 2313625 GA 2313626
Score = 100 bits (110), Expect = 5e-19
Identities = 97/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 2324613 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2324670
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 2324671 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2324730
Query 121 GA 122
||
Sbjct 2324731 GA 2324732
Score = 96.9 bits (106), Expect = 6e-18
Identities = 97/122 (80%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 2265119 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 2265175
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 2265176 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2265235
Query 121 GA 122
||
Sbjct 2265236 GA 2265237
Score = 96.9 bits (106), Expect = 6e-18
Identities = 97/122 (80%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 2274931 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 2274987
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 2274988 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2275047
Query 121 GA 122
||
Sbjct 2275048 GA 2275049
Score = 96.9 bits (106), Expect = 6e-18
Identities = 97/122 (80%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 2293666 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 2293722
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 2293723 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2293782
Query 121 GA 122
||
Sbjct 2293783 GA 2293784
Score = 96.9 bits (106), Expect = 6e-18
Identities = 97/122 (80%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 2302074 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAA-AGCCAGT 2302130
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 2302131 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2302190
Query 121 GA 122
||
Sbjct 2302191 GA 2302192
Score = 96.9 bits (106), Expect = 6e-18
Identities = 97/122 (80%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 2338524 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 2338580
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 2338581 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2338640
Query 121 GA 122
||
Sbjct 2338641 GA 2338642
Score = 96.9 bits (106), Expect = 6e-18
Identities = 97/122 (80%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 2351058 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 2351114
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 2351115 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2351174
Query 121 GA 122
||
Sbjct 2351175 GA 2351176
Score = 89.7 bits (98), Expect = 8e-16
Identities = 96/122 (79%), Gaps = 5/122 (4%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| | |||| | | ||| ||| | ||| || ||| || ||||
Sbjct 2363617 GTACGAGAGGAACCGTG--ATTC-GCACAAT-GGTCATCGCGCTTGG-TGAAAAGCCAGT 2363671
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 2363672 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2363731
Query 121 GA 122
||
Sbjct 2363732 GA 2363733
>seq14
Length=17716633
Score = 100 bits (110), Expect = 5e-19
Identities = 97/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 17516373 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 17516430
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 17516431 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 17516490
Query 121 GA 122
||
Sbjct 17516491 GA 17516492
Score = 100 bits (110), Expect = 5e-19
Identities = 97/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 17548404 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 17548461
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 17548462 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 17548521
Query 121 GA 122
||
Sbjct 17548522 GA 17548523
Score = 96.9 bits (106), Expect = 6e-18
Identities = 90/112 (80%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 17504167 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 17504224
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
| |||||||||||||| | ||||||||| || |||||||||||||||||||
Sbjct 17504225 GGCGCGAAGCTACCATGCGTTGGATTATGACTAAACGCCTCTAAGTCAGAAT 17504276
Score = 91.5 bits (100), Expect = 2e-16
Identities = 95/122 (78%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||||| || ||| | | |||| || | ||| || ||| || ||||
Sbjct 17486076 GTATGAGAGGAACCGTTGA-TTC-GCACAATTAGTCATCGCGCTTGGTTGAAAAGCCAGT 17486133
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| ||||| ||||||||||||||||||| || |
Sbjct 17486134 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAATGCCTCTAAGTCAGAATCCAAGCTA 17486193
Query 121 GA 122
||
Sbjct 17486194 GA 17486195
>seq8
Length=18835763
Score = 100 bits (110), Expect = 5e-19
Identities = 97/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 16197829 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 16197772
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 16197771 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 16197712
Query 121 GA 122
||
Sbjct 16197711 GA 16197710
Score = 100 bits (110), Expect = 5e-19
Identities = 97/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 16209781 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 16209724
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 16209723 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 16209664
Query 121 GA 122
||
Sbjct 16209663 GA 16209662
Score = 96.9 bits (106), Expect = 6e-18
Identities = 97/122 (80%), Gaps = 3/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 16156391 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 16156335
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 16156334 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 16156275
Query 121 GA 122
||
Sbjct 16156274 GA 16156273
Score = 96.9 bits (106), Expect = 6e-18
Identities = 97/122 (80%), Gaps = 3/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 16167420 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAA-AGCCAGT 16167364
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 16167363 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 16167304
Query 121 GA 122
||
Sbjct 16167303 GA 16167302
>seq1
Length=48367220
Score = 100 bits (110), Expect = 5e-19
Identities = 97/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 39269619 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 39269676
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 39269677 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 39269736
Query 121 GA 122
||
Sbjct 39269737 GA 39269738
>seq9
Length=12942059
Score = 96.9 bits (106), Expect = 6e-18
Identities = 96/122 (79%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 246472 GTACGAGAGGAACCGTTGA-TTC-GTACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 246415
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| ||||||||||||||||| |||||| || |
Sbjct 246414 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCCGAATCCGGGCTA 246355
Query 121 GA 122
||
Sbjct 246354 GA 246353
Score = 91.5 bits (100), Expect = 2e-16
Identities = 95/122 (78%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||| ||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 338352 GTACGAGAGTAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 338295
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||| |||||||||||||||||||||||| || |
Sbjct 338294 GGCGCGAAGCTACCGTGCATTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 338235
Query 121 GA 122
||
Sbjct 338234 GA 338233
Score = 91.5 bits (100), Expect = 2e-16
Identities = 95/122 (78%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | |||| || | ||| || ||| || ||||
Sbjct 378264 GTACGAGAGGAACCGTTGA-TTC-GCACAATTAGTCATCGCGCTTGGTTGAAAAGCCAGT 378321
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||| ||||| || |
Sbjct 378322 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAAAATCCGGGCTA 378381
Query 121 GA 122
||
Sbjct 378382 GA 378383
>seq15
Length=15134944
Score = 91.5 bits (100), Expect = 2e-16
Identities = 95/122 (78%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||||| || ||| | ||||||||| |||| | | ||| || ||||
Sbjct 9363769 GTATGAGAGGAACCGTTGA-TTC-GCATAATTGGTCTTTGTGCTTAGTTGAAAAGCCAGT 9363712
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||||||| | | ||||||||| |||||| |||||| ||||||||||| || |
Sbjct 9363711 GGTGCGAAGCTACCGTGCGTTGGATTATGACTGAACACCTCTATGTCAGAATCCAGGCTA 9363652
Query 121 GA 122
||
Sbjct 9363651 GA 9363650
>seq638
Length=11486
Score = 80.6 bits (88), Expect = 4e-13
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
|| ||||| |||||||||||| | | ||||||||| |||||||||||||||||||||||
Sbjct 398 AGCCAGTGGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATC 339
Query 114 CATGCCAGA 122
| || |||
Sbjct 338 CGGGCTAGA 330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819180048896
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