Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 194 1e-44 seq17 140 3e-28 >seq1 Length=48367220 Score = 194 bits (214), Expect = 1e-44 Identities = 554/843 (66%), Gaps = 18/843 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| || || ||||||| || ||||||||| | || ||| Sbjct 31903690 ATGTACAAGAAAGCTGAAGCCTCATTTTGGACGGCTGAAGAGGTCGATCTCTCTTCAGAT 31903631 Query 61156 ATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGG 61213 | | ||||||| | | || | | ||| ||| |||||| || || | | Sbjct 31903630 GTCGGTCACTGGGAAAACCTGACTCCTGACGAGAA--ACACTTCATTTCTCACGTCCTTG 31903573 Query 61214 CGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGG 61273 | ||||| ||||| || || || |||||| |||||| | | |||||| | | | Sbjct 31903572 CCTTCTTCGCCGCCTCTGATGGAATCGTCCTCGAGAATATCGCCGGGCGTTTCATGAAAG 31903513 Query 61274 AGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCC 61333 | || ||||| |||||||||||| ||||||||| |||||||| || || |||||| ||| Sbjct 31903512 AAGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGGTTCCAGATCGCGATTGAGAATATCC 31903453 Query 61334 ACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAAC 61393 |||| |||||||||||| || | | || || ||||||| ||| | || | | Sbjct 31903452 ACTCAGAGATGTACAGTCTTTTGTTGGAGACCTACATCAAGGATTCTACTGAGAAGAACC 31903393 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | |||| ||||||| |||||| | ||| ||| ||| ||||| ||||| || Sbjct 31903392 GCCTGTTTCATGCCATTGAGACGGTGCCGTGTGTGGCTAAGAAGGCGGAGTGGGCTTTAC 31903333 Query 61454 ATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| || ||| | | |||| || | || | || ||||| || Sbjct 31903332 GGTGGATC-----GACGGAGGCGAGAGTTTTGCGGAGAGGTTAATTGCTTTTGCTTGCGT 31903278 Query 61512 CGAGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 || || |||||||| | ||| |||| || || |||||||| || |||||||| | Sbjct 31903277 GGAAGGGATATTTTTCTCGGGGAGTTTTTG-TGCGATATTTTGGTTAAAAAAACGTGGGC 31903219 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||| || ||||||||| || |||||||| || || || || || | ||||||| Sbjct 31903218 TAATGCCAGGCCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGGCTTCATTGTG 31903159 Query 61631 ATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGG 61690 |||| || | | || | || || || ||| | | |||||||| ||| Sbjct 31903158 ATTTCGCGTGTCTCCTTTACA---GCCTGTTGAGGAAGAAGCTGAGTGAGGAGCGCGTGA 31903102 Query 61691 GTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCG 61750 | ||| || || || || ||| || ||| ||| || ||| | | || Sbjct 31903101 AGGGGATAGTGAAGGAAGCTGTGGATATAGAGAGGGAGTTTGTGGTGGACTCGCTACCAT 31903042 Query 61751 TCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACC 61810 | | | | || |||||| | | | ||| ||||||||||| ||||| || || Sbjct 31903041 GCGCGTTGGTGGGGATGAATGGGGAGTTGATGAGTCAGTATATTGAGTTTGTAGCTGATA 31902982 Query 61811 GTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 | ||||| ||| |||||| | | | | || ||| | || |||||||||| Sbjct 31902981 GGCTGTTGGGTGCGCTTGGGTGCG-GGAAGGTGTACAATGTGGCTAATCCATTTGATTGG 31902923 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| |||| || || | || ||||| ||||| |||||||| | || || || ||| Sbjct 31902922 ATGGAGTTGATATCCTTGCAAGGGAAGACAAATTTCTTCGAGAAGAGAGTCGGAGAGTAT 31902863 Query 61930 CAA 61932 ||| Sbjct 31902862 CAA 31902860 >seq17 Length=14661173 Score = 140 bits (154), Expect = 3e-28 Identities = 542/842 (64%), Gaps = 16/842 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || || || ||||| ||||| | |||||||||||| | || || Sbjct 8256143 ATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTCTCGTCGGAT 8256202 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 || ||||||| | | || || | || ||||| ||||| | || Sbjct 8256203 ATCCGCCACTGGGAAAACCTGACTCCCGACGAGAAGCACTTCATCTCTCATGTCCTTGCC 8256262 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || || || || ||| || ||| | | |||||| | | ||| Sbjct 8256263 TTCTTCGCCGCCTCTGATGGGATTGTCCTCGAAAATCTCGCCGGGCGTTTCATGAAAGAG 8256322 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||||| |||||||||||| ||| ||||| |||||||| || || |||||| ||||| Sbjct 8256323 GTCCAAGTCTCGGAGGCGCGTGCTTTTTACGGATTCCAGATCGCGATTGAGAATATCCAC 8256382 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 || |||||||||||| |||| | || || || |||| ||| | ||| | || Sbjct 8256383 TCAGAGATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGGAGAAGAATCGT 8256442 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 |||| |||| ||||| ||| | ||| ||| ||| || |||||||| Sbjct 8256443 CTGTTTCATGCTATCGAAACGGTGCCGTGTGTGGCTAAGAAGGCACGGTGGGCCTTGCGG 8256502 Query 61456 TGGATCACCAGTACAACGGCTACA--TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| | | | || | | || | || | | | || ||||| || | Sbjct 8256503 TGGATTGACGGGA-----GCGAGAGTTTCGCGGAGAGGCTAGTTGCTTTTGCTTGCGTGG 8256557 Query 61514 AGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 | || |||||||| | ||| |||| || || |||||||| || || ||||| | Sbjct 8256558 AAGGGATATTTTTCTCGGGGAGTTTTTG-TGCGATATTTTGGTTAAAAAAGCGTGGGTTG 8256616 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || | ||||| || |||||||| || || || || || | ||||||||| Sbjct 8256617 ATGCCGGGGTTAACCTTTTCAAACGAGTTGATCTCGCGAGATGAAGGGCTTCATTGTGAT 8256676 Query 61633 TTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 || || || || || | || ||| ||| ||| | | ||||||| ||| Sbjct 8256677 TTCGCGTGCCTT-CTCTACA---GCTTGCTGAGGAAGAAGCTGAGTGAGGAGCAAGTGAA 8256732 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 | ||| || || || || ||| || ||| ||| || ||||| |||| Sbjct 8256733 GGGGATAGTGAAGGATGCAGTGGATATTGAGAGGGAGTTTGTGGTGGACGCGCTGCCATG 8256792 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | | | || ||||| | | | ||| ||||||||||| || || || || | Sbjct 8256793 CGCGTTGGTAGGGATGAACGGGGAGTTGATGAGTCAGTATATTGAGTTCGTAGCTGATAG 8256852 Query 61812 TCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCA 61870 ||||| ||| |||||| | | | | || ||| | || ||||| |||| | Sbjct 8256853 GCTGTTGGGTGCGCTTGGGTGCG-GGAAGGTGTACAATGTGGCTAATCCATTCGATTGGA 8256911 Query 61871 TGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATC 61930 |||| |||| || || | || ||||| ||||| ||||||||| | ||||| || |||| Sbjct 8256912 TGGAGTTGATATCTTTGCAAGGGAAGACTAATTTCTTCGAGAAAAGAGTAGGAGAGTATC 8256971 Query 61931 AA 61932 || Sbjct 8256972 AA 8256973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555818764960