Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2514 637 5e-178 seq13 183 3e-41 seq4 105 7e-18 seq1 98.7 1e-15 seq15 89.7 6e-13 >seq2514 Length=157033 Score = 637 bits (706), Expect = 5e-178 Identities = 720/962 (75%), Gaps = 2/962 (0%) Strand=Plus/Minus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 ||||| || ||| | || ||||| || || ||||||| || ||| | ||| | |||||| Sbjct 1304 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT 1245 Query 159890 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 159948 |||| || || |||| ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 1244 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGA 1186 Query 159949 ACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 160008 ||| || |||| || || | || || ||||| ||||| |||||||| || |||| | Sbjct 1185 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTAC 1126 Query 160009 TTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTG 160068 ||| || || || | ||||| || || || |||||||| ||||| | || || || Sbjct 1125 TTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1066 Query 160069 GCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGC 160128 | | || ||||| ||||||| | || | || | |||||| | | || | | Sbjct 1065 GTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1006 Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 || ||||| |||||||||||||| || |||||| ||||||||||| ||||| ||| Sbjct 1005 TTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 946 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248 |||||| || ||||| || || || ||| ||||||| ||| | | || || ||||||| Sbjct 945 TGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCA 886 Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGT 160308 || ||| || |||| |||||||| || ||||||||||||||||||| |||| |||| Sbjct 885 AGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGT 826 Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGT 160368 |||||| || || ||||| ||||||||||| || || |||||| | || || ||||| || Sbjct 825 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 766 Query 160369 ATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAG 160428 |||||| || || || ||| |||||||||||| ||| |||| || |||||| | |||| Sbjct 765 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAG 706 Query 160429 AGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC 160488 || || ||||||| ||| || || | ||||||| || |||||||||||||| || Sbjct 705 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 646 Query 160489 TTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTT 160548 ||| || ||||| || || ||||| || || || || ||||||||||||||||| || Sbjct 645 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 586 Query 160549 TAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTT 160608 ||||||||| || ||| | || |||||| | |||||||||||||| || || |||||||| Sbjct 585 TAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 526 Query 160609 CACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTC 160668 |||||| | ||| || || ||||| |||||||| ||||||||||| |||||||| || Sbjct 525 CACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATC 466 Query 160669 CATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGG 160728 | | || | ||||| | || | || || ||||| || | ||||||| ||| Sbjct 465 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 406 Query 160729 TCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGC 160788 || || |||||||| ||||| || ||||| ||||| || |||||||| ||||| ||||| Sbjct 405 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGC 346 Query 160789 TG 160790 || Sbjct 345 TG 344 Score = 562 bits (622), Expect = 3e-155 Identities = 727/997 (73%), Gaps = 13/997 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||||||||||| || ||||| || || | || ||||| ||| ||| |||| Sbjct 32850 GACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCC 32909 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || ||||||||||||||| | || Sbjct 32910 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTGGCC 32969 Query 161665 AGTTCCTATCTTGAGGGT-GCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGC 161723 ||||||||| | || ||| |||| || | | || || |||||| ||||| ||| | Sbjct 32970 AGTTCCTATTTGGAAGGTTGCAACTTCT-TAACCGCCGCAGTTTCTACTCCTGCTAATAG 33028 Query 161724 TATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 161782 | | | |||||| || || || || ||||||||||| || ||||| ||||| | | Sbjct 33029 TTTAGCCCATTCT-TTATTATTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTT 33087 Query 161783 GGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTG 161842 || ||| | || || | |||| |||||| || |||||||| ||||||| || || | Sbjct 33088 GGTGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACGGAGCTTTCGGACTAATAG 33147 Query 161843 GATTCATGCTTCGTCAGTTTGAACTTGCTCGTCTTATCGGTA----TCCGTCCTTACAAT 161898 | || ||| | ||||| |||||||||||||| ||| || | || ||||| ||| Sbjct 33148 GTTTTATGTTACGTCAATTTGAACTTGCTCG----ATCCGTGCAATTACGACCTTATAAT 33203 Query 161899 GCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTG 161958 || || || ||||||||||| ||||| |||||||| || || || || ||||| || Sbjct 33204 GCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATTCCTGATTTATCCACTA 33263 Query 161959 GGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTA 162018 || ||||| |||||||| ||||| ||||| || || ||||| || | ||| | Sbjct 33264 GGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTATATTTCGATTCATC 33323 Query 162019 CTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCA 162078 || || | ||||| || || |||||||| || || || || || |||||||| || || Sbjct 33324 CTCTTTTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCATATGATGGGAGTTGCC 33383 Query 162079 GGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTC 162138 ||| | ||||| | |||| |||| | |||||||| |||| ||||| ||||| || | Sbjct 33384 GGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 33443 Query 162139 TACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAG 162198 | |||||||||| |||||||| ||| |||||| || | || |||| || || Sbjct 33444 TTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAA 33503 Query 162199 ACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGT 162258 ||||| || ||||| || || ||||| || ||||| || || || || |||||||| Sbjct 33504 ACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCC 33563 Query 162259 AATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGT 162318 ||||| |||||||| |||||||||||| | || || || || | ||| | |||| ||| Sbjct 33564 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 33623 Query 162319 TCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAG 162378 || | || | |||| || ||||| || || ||||| || ||||| || |||||||| Sbjct 33624 GCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAA 33683 Query 162379 ATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAAT 162438 || ||||||||||| |||||||||||||| || ||||| ||||| ||||| || || ||| Sbjct 33684 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTTTTAAAT 33743 Query 162439 GAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCT 162498 ||||| ||||||| ||| |||| | ||||| || ||||| ||| || |||||||| Sbjct 33744 GAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 33803 Query 162499 GAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 ||||| ||||| || | || ||||| || | ||||| Sbjct 33804 GAGGAGGTTCTACCCCGTGGAAACGCTCT-TTAATGG 33839 >seq13 Length=15658869 Score = 183 bits (202), Expect = 3e-41 Identities = 284/405 (70%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 160255 TTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCA 160314 ||| || |||| ||||||| || || | |||||||||||||| |||| |||||||| | Sbjct 4833147 TTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTA 4833206 Query 160315 AGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGG 160374 ||| || || | |||||||| | || || |||||| | || || | || ||| | Sbjct 4833207 AGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAA 4833266 Query 160375 TGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGAC 160434 || || | | | || ||||||||| | | |||| || |||| | | ||| || || Sbjct 4833267 TGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCTCTAATTTGATCAAGGAAAC 4833326 Query 160435 GACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAA 160494 | | ||| ||| ||| || | ||||||| || |||||| ||||||| ||||| | Sbjct 4833327 CAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGA 4833386 Query 160495 CATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAA 160554 |||||| | || ||||| | || || | ||||||| ||||||| ||||||| Sbjct 4833387 CATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACAG 4833446 Query 160555 CTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGC 160614 ||| | ||| | || |||||| | | | |||||||| | | || |||||||||||| | Sbjct 4833447 CTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGTTCACTAC 4833506 Query 160615 CCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTT 160659 ||||| || || ||| | ||||||| ||| |||| |||| Sbjct 4833507 TTTTGGTATTAGCACTATGCCTCTCAATCTAAAT--TTTCTACTT 4833549 >seq4 Length=23188140 Score = 105 bits (116), Expect = 7e-18 Identities = 138/188 (73%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTG---TTGACGGACCCTACTCCTGTCGTGCTGGTG 161029 |||||||| |||||| || |||| | ||||| |||||||| || | ||||| Sbjct 21677422 TCCTTGACCATGCTGAGGAGGCAGAAGAGATTGACCTCCCCTACTCATGCAGGGCTGGCT 21677481 Query 161030 CTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGAT-CAATCT 161088 | |||||| | ||| ||| ||||||| || || ||||| ||||| |||||| | | || Sbjct 21677482 CATGCTCTTCATGTCTTGGCAAGATTGTGAAGGGGACTGTGGATCAGTCTGATGCTAGCT 21677541 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 | ||| |||||||| || | || ||| | || || ||||| ||||||||||| || Sbjct 21677542 T-CCTTGATGATGACCAGATAGAGGAAGGCTGGGTTCTCACCTGTGTTGCTTATCCTACG 21677600 Query 161149 TCTGATGT 161156 |||||||| Sbjct 21677601 TCTGATGT 21677608 >seq1 Length=48367220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 |||||||| ||||| || | |||| ||||| || ||||| || | |||||||||| Sbjct 47650781 TCCTTGACAAGGCTGAAGAGGAAGGTATTGACCTTCCATACTCATGCAGGGCTGGTGCTT 47650722 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGAT-CAATCTTTC 161091 ||||| | |||||||| ||||| | | || | ||| ||||| |||||| | | ||||| Sbjct 47650721 GCTCTTCATGTGCTGGGAAGATCGTGGAAGGGATTGTGGATCAGTCTGATGCTAGCTTTC 47650662 Query 161092 CTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCT 161151 |||| || || || | || | || | || || ||||| |||||||||| | ||| Sbjct 47650661 TTGGA-GAAGACCAGATAGAGGCTGGTTGGGTTCTCACCTGTCTTGCTTATCCTAGGTCT 47650603 Query 161152 GAT 161154 ||| Sbjct 47650602 GAT 47650600 >seq15 Length=15134944 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 162394 GATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCA 162453 |||||||||||||| || |||| ||||| ||||| || || ||| || | ||||| | Sbjct 11738121 GATCCTGAATTTGAGACTTTCTGTACCAAAAATATTCTTTTAAATAAAAGCATTCGTACT 11738062 Query 162454 TGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCT 162513 ||| |||| | ||||| || ||||| ||| || ||||||||||| | ||||| || Sbjct 11738061 TGGATGGCGACTTAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGAAGGTTCTACCC 11738002 Query 162514 AGAGGTAACGCACT 162527 | || ||||| || Sbjct 11738001 CGTGGAAACGCTCT 11737988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551358673009200