Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq2514 574 6e-159 seq13 120 4e-22 >seq2514 Length=157033 Score = 574 bits (636), Expect = 6e-159 Identities = 727/991 (73%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| | ||| | ||| ||| | |||||||| ||| | || ||||| ||||| || Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||| ||||| | | | ||||| |||| || || |||| || | ||||| || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 1213 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 || |||||||||||||| || || ||||| || |||| || || | ||||||||||| Sbjct 1212 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1153 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 ||||| |||||||| || | ||| | || || || || | ||||| ||||| || Sbjct 1152 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAAT 1093 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 |||||||| || || | ||||| ||| | |||||||| ||||||| | || | || Sbjct 1092 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 1033 Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTA 189206 | |||||| | | || | || || | ||||||| |||||||||||||| || Sbjct 1032 TCTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTT 976 Query 189207 CCGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCAT 189265 |||||| ||||||||||||||||| ||| |||| || || || |||||||| || || Sbjct 975 CCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTA 917 Query 189266 CCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGG 189325 | || || || || | ||||| | |||||||| ||| || || | ||||| | | Sbjct 916 CTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAG 857 Query 189326 GTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 189385 | ||| ||| || || |||| ||| |||| ||||| || |||||||||||||| |||| Sbjct 856 GAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGC 797 Query 189386 ACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGC 189445 |||| || |||||| | || || || ||||| ||||| || || || ||| || |||| Sbjct 796 ACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGC 737 Query 189446 ATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACT 189505 ||||||| | || |||||| || | | |||||||| |||| || || || Sbjct 736 ATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 677 Query 189506 ATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATT 189565 | ||||||| ||||| ||||| |||||||| || || ||||| || |||||||| |||| Sbjct 676 AAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATT 617 Query 189566 TCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCC 189625 | || || | |||||||||||||| || |||||||| ||||| | || |||||| Sbjct 616 TTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCT 557 Query 189626 TCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCAT 189685 | ||||| ||||| || || ||||||||||| || || | || | ||||| ||||| | Sbjct 556 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTT 497 Query 189686 TCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGA 189745 |||| || ||||| ||||| ||||| ||||| | ||||| ||||||||||||| | | Sbjct 496 TCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 437 Query 189746 ACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTA 189805 | || ||||| || || | ||||||||| |||||||||||||| |||||||| |||| Sbjct 436 ATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 377 Query 189806 ACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 | ||||| || |||||||| || || || || Sbjct 376 ATGCTCATAATTTCCCTCTAGACCTAGCTGC 346 Score = 511 bits (566), Expect = 6e-140 Identities = 724/1017 (71%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || || || || |||||||||||||| || Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166 | || ||||| ||||| ||| | || ||| || | || ||| || || | Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGT 33059 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 |||||| | ||||| ||||| | ||| ||| | || || | ||| ||||||| Sbjct 33060 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTT 33119 Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGT 190346 || |||||||| ||||||| ||||| || || ||| | ||||| |||||||| || || Sbjct 33120 GCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG- 33178 Query 190347 CTCATCGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTT 190402 ||| || | || ||||| ||||| || || ||||||||||| || || ||||| Sbjct 33179 ---ATCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTT 33235 Query 190403 TGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTT 190462 |||| || || || || || || || ||||| || |||||||||| ||||| || Sbjct 33236 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 33295 Query 190463 CGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCT 190522 || || ||||| || || || ||| ||||||| || || || || ||||| ||||| || Sbjct 33296 TGGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACT 33355 Query 190523 GAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAAT 190582 |||||| || || |||||||| ||||| ||| | |||| | || || || | || || Sbjct 33356 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTAT 33415 Query 190583 CCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAA 190642 ||||||| |||||||| |||||||| | |||||||||||| ||||| || || Sbjct 33416 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 33475 Query 190643 AGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTG 190702 || || || | || |||| ||||| || ||||| |||||||| |||||||| || || Sbjct 33476 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTG 33535 Query 190703 GTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTT 190762 ||| ||||| ||||| ||||| || ||||| | ||||| |||||||||||| | || Sbjct 33536 GTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 33595 Query 190763 TGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 190822 ||| || || | ||| | |||| | | | || | ||||||| ||||| ||||| Sbjct 33596 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCT 33655 Query 190823 TCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGAC 190882 ||||| |||||||| || || || || ||| | ||||| |||||||| || || ||||| Sbjct 33656 ACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 33715 Query 190883 TTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGA 190942 ||| || || |||||||| ||||| |||||||| ||||| | ||| |||| || || Sbjct 33716 TTTCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGA 33775 Query 190943 TCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 ||| || ||||| || || |||| || || || || | || | || |||||||| Sbjct 33776 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 33832 >seq13 Length=15658869 Score = 120 bits (132), Expect = 4e-22 Identities = 245/364 (67%), Gaps = 0/364 (0%) Strand=Plus/Plus Query 189333 TGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 189392 ||| || || |||| ||| |||| ||| |||| ||||| ||||||| || |||| || Sbjct 4833177 TGGTACTTTTAACTTTATGATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATT 4833236 Query 189393 CCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTC 189452 |||||| | || || ||||| | | | || || | | | | |||||||||| Sbjct 4833237 TCACATGTTAGGCGTAACAGGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTT 4833296 Query 189453 ACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTA 189512 | || |||||| || | ||||||| ||| || ||| || | ||||| Sbjct 4833297 TTTGGTAACCTCTAATTTGATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTA 4833356 Query 189513 CAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCG 189572 || ||||| ||| | |||||||| || ||||||| | ||||||||| | ||| || | Sbjct 4833357 CAGATTTGGTCAAAAGGAAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTG 4833416 Query 189573 TCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGC 189632 | |||||| ||||||| || |||| ||| | ||| | || |||||| | | | | Sbjct 4833417 ACCGATCTTCTAATATGCTAGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTC 4833476 Query 189633 CTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCT 189692 ||||| | | ||||||||||| || | | || | ||||| ||| | |||| || Sbjct 4833477 TTGGCCTATAATAGGTATCTGGTTCACTACTTTTGGTATTAGCACTATGCCTCTCAATCT 4833536 Query 189693 CAAT 189696 ||| Sbjct 4833537 AAAT 4833540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634060074036000