Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq2514 668 0.0 seq13 150 2e-31 seq19 118 1e-21 seq18 93.3 5e-14 seq6 86.0 7e-12 seq1 86.0 7e-12 seq11 82.4 9e-11 >seq2514 Length=157033 Score = 668 bits (740), Expect = 0.0 Identities = 729/963 (76%), Gaps = 4/963 (0%) Strand=Plus/Minus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 || |||||||| | || ||||| ||||| ||||||| || ||| | ||| | ||||| Sbjct 1304 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT 1245 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| || ||| ||||||| || || || ||||| || ||||| ||||| Sbjct 1244 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGA 1186 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 ||| ||| |||| || || | ||||||||||| ||||| |||||||| || ||||| | Sbjct 1185 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTAC 1126 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || || || | ||||| ||||| || |||||||| ||||| |||||||||| Sbjct 1125 TTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1066 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897 | | ||||| || |||||||| | || | || | |||||| | | || | || Sbjct 1065 GTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1006 Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956 |||||||| || |||||||||||| | ||| || || ||||| || ||||| ||| | Sbjct 1005 TTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTG 947 Query 160957 TTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTC 161016 |||||||||| || |||||||| || || | ||| || ||| | | ||||| |||||| Sbjct 946 TTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTC 887 Query 161017 AAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTG 161076 |||| ||| || ||||| ||||| || || ||||||||||| || ||||| ||| ||| Sbjct 886 AAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTG 827 Query 161077 TCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTG 161136 | |||||||| || ||||||||||| |||||||| || |||||||| || || ||||||| Sbjct 826 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTG 767 Query 161137 TCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTC 161196 | ||||| || || || ||| || ||||||||||| |||| || ||| || | Sbjct 766 TATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCA 707 Query 161197 GTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGA 161256 | |||||||| || || || || || | ||||||| ||||||||||| ||||| | Sbjct 706 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAA 647 Query 161257 CCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 161316 | || || ||||| || ||||||||||| || || || ||||||||||||| ||| | Sbjct 646 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 587 Query 161317 TCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 161376 | |||||||| ||||| || || |||||| | || || |||||||| || |||||||||| Sbjct 586 TTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 527 Query 161377 TCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGT 161436 ||||||| | ||| | ||| ||||| ||||| || || || ||||| |||||||| | Sbjct 526 TCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAAT 467 Query 161437 CCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTA 161496 | | | ||| |||| || || | || ||||||||||| || | || ||||||| Sbjct 466 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 407 Query 161497 ACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTG 161556 |||||||||||||||| ||||| || ||||||||||| || |||||||| || || |||| Sbjct 406 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTG 347 Query 161557 CTG 161559 ||| Sbjct 346 CTG 344 Score = 562 bits (622), Expect = 3e-155 Identities = 724/993 (73%), Gaps = 12/993 (1%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || || || || |||||||||||||| || || | || ||||| ||| ||| |||| Sbjct 32850 GACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCC 32909 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| ||| ||||| ||||| || | || Sbjct 32910 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTGGCC 32969 Query 164037 TCTAGTTACC--TTG--AGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGA 164092 |||| | ||| ||| ||| || ||| | || || || || || || |||||| | Sbjct 32970 ---AGTTCCTATTTGGAAGGTTGC-AACTTCTTAACCGCCGCAGTTTCTACTCCTGCTAA 33025 Query 164093 TGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAG 164152 | | | | |||||| | | |||| ||||||||||| | || || || || | | | Sbjct 33026 TAGTTTAGCCCATTCTTTATTATTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCG 33085 Query 164153 GTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGAT 164212 ||||| ||| | || || | ||| ||||||| || |||||||| |||||| || || Sbjct 33086 TTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACGGAGCTTTCGGACTAAT 33145 Query 164213 CGGTTTCATGCTTCGGCAGTTTGAAATTGCACGT--CTTGTAGGTATCCGTCCGTACAAT 164270 ||||| ||| | || || |||||| |||| || | || | || || || || ||| Sbjct 33146 AGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTGCAATTA--CGACCTTATAAT 33203 Query 164271 GCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTC 164330 || || || ||||||||||| ||||| || ||||| || ||||| || || || || Sbjct 33204 GCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATTCCTGATTTATCCACTA 33263 Query 164331 GGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTC 164390 || || ||| ||||||||||||| || ||||| || || || || || ||||| || Sbjct 33264 GGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTATATTTCGATTCATC 33323 Query 164391 TTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCA 164450 | || ||||||| || ||||| |||||||| ||||| || ||||||||||| ||||| Sbjct 33324 CTCTTTTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCATATGATGGGAGTTGCC 33383 Query 164451 GGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTG 164510 || | | || | |||||| || || ||||||||||||||||| ||||| |||||||| Sbjct 33384 GGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 33443 Query 164511 TTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAG 164570 |||||||||||||| ||||||| ||| || || | || ||||||| ||||| Sbjct 33444 TTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAA 33503 Query 164571 ACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGC 164630 ||||| || |||||||| ||||||||||| ||||| || |||||||| ||||||| | Sbjct 33504 ACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCC 33563 Query 164631 AATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGT 164690 ||||| |||||||| || ||||||||| | ||||| || || | || | |||| ||| Sbjct 33564 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 33623 Query 164691 TCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAG 164750 || |||| | | ||||| || || || || ||||| ||||| || || |||||||| Sbjct 33624 GCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAA 33683 Query 164751 ATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAAT 164810 || | ||||| || ||||||||||||||||| |||||||| || || || || | ||| Sbjct 33684 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTTTTAAAT 33743 Query 164811 GAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCA 164870 ||||| | ||||| |||||||| | ||| ||||| || ||| || |||| || Sbjct 33744 GAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 33803 Query 164871 GAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||||| ||||| || | || ||||| || ||| Sbjct 33804 GAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 33836 >seq13 Length=15658869 Score = 150 bits (166), Expect = 2e-31 Identities = 269/393 (68%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 161024 TTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCA 161083 ||| || ||||| |||| || || || | |||||| || ||||| ||| |||| ||| | Sbjct 4833147 TTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTA 4833206 Query 161084 GGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGG 161143 || || || ||||||| || |||| || |||||||| || || | ||| | | | Sbjct 4833207 AGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAA 4833266 Query 161144 TGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAAC 161203 || || | | | | |||||||||| |||| || ||| || | ||||| Sbjct 4833267 TGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCTCTAATTTGATCAAGGAAAC 4833326 Query 161204 CACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAA 161263 || | || || ||| || | ||||||| ||||||||| | ||||| || || | Sbjct 4833327 CAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGA 4833386 Query 161264 CATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAA 161323 |||||| | ||||||||||| || || | | ||||||| |||| ||| || |||| Sbjct 4833387 CATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACAG 4833446 Query 161324 CTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGC 161383 ||| | ||| || || |||||| | | | |||||| | | ||||||||||||||| | Sbjct 4833447 CTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGTTCACTAC 4833506 Query 161384 ACTTGGTGTCTCCACCATGGCATTCAACCTGAA 161416 ||||| | ||| ||| | |||| || || Sbjct 4833507 TTTTGGTATTAGCACTATGCCTCTCAATCTAAA 4833539 >seq19 Length=16008726 Score = 118 bits (130), Expect = 1e-21 Identities = 112/142 (79%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 164383 GATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGG 164442 ||||| || | || ||||||| || ||||| |||||||| ||| | || ||||||| || Sbjct 8026081 GATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACGCATTTCATATGACGG 8026022 Query 164443 GTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGA 164502 | ||||| || | | || | |||||| | |||||||||||||||||||| ||||| | Sbjct 8026021 GAGTTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAA 8025962 Query 164503 ATACTTTGTTTGAAGATGGTGA 164524 ||||||| ||||||||| ||| Sbjct 8025961 ATACTTT-ATTGAAGATGATGA 8025941 >seq18 Length=14966190 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 160614 GGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTAC 160672 || ||||| ||||| ||||||| || ||| | ||| | ||||| |||| ||||||| Sbjct 5914789 GGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTAT 5914847 Query 160673 TGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTC 160732 || ||| ||| | | || || | ||||| || ||||| |||||||| || |||| | Sbjct 5914848 CGCTTTCATTGATACCCCTCCAATAGACATTGATGGTATTCGTGAACCTTTTTCTGGATT 5914907 Query 160733 ACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTT 160779 | || ||||||||||| ||||| | |||||| || ||||| ||| Sbjct 5914908 AA--ATTTATGGAAACAATATCATTTATGGTGCCATTATTCCTACTT 5914952 >seq6 Length=26894541 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 164466 GCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAA 164525 ||||| || || ||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct 18468590 GCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGAT 18468649 Query 164526 CAATCAAATACTTTC 164540 | ||||||| ||| Sbjct 18468650 GATGCAAATACATTC 18468664 >seq1 Length=48367220 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 164458 TTGG-TGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAA 164516 |||| || |||||| || || ||||||||||||||||| ||||| |||||||| |||||| Sbjct 3694792 TTGGATGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 3694851 Query 164517 GATGGTGAACAATCAAATA 164535 |||||||| | |||||| Sbjct 3694852 GATGGTGATGATGCAAATA 3694870 >seq11 Length=18885544 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 164445 GTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAAT 164504 ||||| || || | || | |||||| || |||||||||||||||||||| ||||| ||| Sbjct 6484968 GTTGCCGGTATATTGGGCGTTGCTCTGCTATGTGCTATTCATGGTGCTACTGTAGAAAAT 6484909 Query 164505 ACTTTGTTTGAAGATGGTGA 164524 | ||| ||| |||||||||| Sbjct 6484908 ATTTTTTTTAAAGATGGTGA 6484889 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 164445 GTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAAT 164504 ||||| || || | || | |||||| || ||||||||||||||||| || ||||| ||| Sbjct 6625961 GTTGCCGGTATATTGGGCGTTGCTCTGCTATGTGCTATTCATGGTGCAACTGTAGAAAAT 6625902 Query 164505 ACTTTGTTTGAAGATGGTGA 164524 | ||| |||||||||||||| Sbjct 6625901 ATTTTTTTTGAAGATGGTGA 6625882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559310423117600