Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq4014 190 4e-46 seq2465 78.8 2e-12 >seq4014 Length=1690 Score = 190 bits (210), Expect = 4e-46 Identities = 247/338 (73%), Gaps = 14/338 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| ||| || ||||| | || ||||| | Sbjct 412 CCCGACGAGGGGAGTGAAACAGTTCCTGAAACCGGATGCTTACAAACAGTGGGAGCTCAA 353 Query 64 TGATTCG------GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACC 117 |||||| ||||| |||| ||||||| |||||| | | ||| ||| || || Sbjct 352 -GATTCGTTCTGAGTGACCGCGTACCTTTTGTATAATGGGTCAGCGACTTAAA-GTAACG 295 Query 118 AGCGAGGTTAAGGGCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGA 176 ||| || ||||| | || || ||| | || ||||||||| || ||||||||| Sbjct 294 AGCAAGCTTAAG-----CCGGTAGGTGTAGGCACAGCGAAAGCGAGTCTGAACAGGGCGT 240 Query 177 CGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCG 236 |||| || || ||||| ||||||| |||||||| ||| | ||||| ||||| | | Sbjct 239 TCAGTTCGTTGCTTTAGACCCGAAACCGAGTGATCTAGCCATGTGCAGGATGAAGGTGGG 180 Query 237 GTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGG 296 ||||| | |||||| ||||||| || |||||||||| | | ||||||| | || Sbjct 179 GTAACACCCACTGGAGGTCCGAACCAGTGCCCGTTGAAAAGGTCTTGGATGACGTGTGGC 120 Query 297 TAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||||||| |||||||||| || Sbjct 119 TAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGT 82 >seq2465 Length=5135 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 3551 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 3610 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 3611 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 3670 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 3671 AACCAAGATCGGATATAGCTGGT 3693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972714821632