Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq73 361 8e-98 seq3376 277 3e-72 seq60 244 2e-62 seq1385 214 3e-53 seq62 181 2e-43 seq880 179 6e-43 seq2504 134 2e-29 seq825 91.5 2e-16 seq101 84.2 3e-14 seq504 82.4 1e-13 seq29 73.4 6e-11 >seq73 Length=736034 Score = 361 bits (400), Expect = 8e-98 Identities = 236/256 (92%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | Sbjct 620040 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTATGAATT-C 620097 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |||| Sbjct 620098 ATCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCATGATAAAATTTCAAAAATTA 620157 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| |||||| ||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 620158 TCCGGGACTGTCGACCAAGGTTATAGACTCGTTGAATACATCAGTGCAGCGCGCGTGCGG 620217 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 620218 CCCAGAACATCTAAGGGCATTACAGACCTGTTATTGCCTCAAACTTCTGTGGCCTAAAAT 620277 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 620278 GCCATAGTCCCTCTAA 620293 >seq3376 Length=3804 Score = 277 bits (306), Expect = 3e-72 Identities = 201/229 (88%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 29 GTACAAAAGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGCATT-C 86 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 87 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 146 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||| || | |||||||| | ||||||||||||||||||| Sbjct 147 ACCCAGACCTTTCGGTCAAGGAGAAAAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 206 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 207 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 255 >seq60 Length=520799 Score = 244 bits (270), Expect = 2e-62 Identities = 149/157 (95%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 100 ACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATAC 159 |||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 345145 ACGATGAAATTTCAAAGATTACTCGGGCCTGTCGGCCAAGGTTATAGACTCGTTGAATAC 345086 Query 160 ATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 219 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345085 ATCAGTCTAGCGTGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 345026 Query 220 CAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||||||||||||||||||||||||| |||||| || Sbjct 345025 CAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAA 344989 >seq1385 Length=128055 Score = 214 bits (236), Expect = 3e-53 Identities = 126/130 (97%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 36543 CCTGTCGGCCAAGGTTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 36602 Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT- 245 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 36603 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATA 36662 Query 246 CTCCCTCGAA 255 |||||| || Sbjct 36663 GTCCCTCTAA 36672 Score = 196 bits (216), Expect = 7e-48 Identities = 117/120 (98%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 35397 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 35454 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35455 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 35514 >seq62 Length=794729 Score = 181 bits (200), Expect = 2e-43 Identities = 153/175 (87%), Gaps = 11/175 (6%) Strand=Plus/Plus Query 73 CAAC-AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGT 131 |||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| Sbjct 226227 CAACGAATTGCAATGATCTATCCCCATCACGATGACATTTCAAAGA-TACCCGGGCCTGT 226285 Query 132 CGGCCAAGGTGATAGACTCGTTGAATA-CATCAGTGTAGCGCGCGTGCGGC-CCAGAACA 189 |||||| || |||||||||| |||| ||||||||| ||||||| ||||| |||| ||| Sbjct 226286 CGGCCA--GTTATAGACTCGTGAAATAGCATCAGTGTCGCGCGCG-GCGGCGCCAG-ACA 226341 Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCA 244 ||||| |||||||| ||||||| ||||| ||||| ||||||||||||||||| Sbjct 226342 TCTAA-GGCATCAC-GACCTGTGGAGGCCTC-AACTTACGTGGCCTAAAAGGCCA 226393 >seq880 Length=185641 Score = 179 bits (198), Expect = 6e-43 Identities = 123/135 (91%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| | ||||||||||||||||||||||| |||||||| | |||||||||||| | Sbjct 171144 GTACAAATGACAGGGACGTAGTCAACGCGAGCT-GATGACTCATGTTTACTAGGAATT-C 171087 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 171086 CTTGTTTAAGACCAACAATTGCAATGATCTATCTCCATCACGATGAAATTTTAAAGATTA 171027 Query 121 CCCGGACCTGTCGGC 135 ||||| ||||||||| Sbjct 171026 CCCGG-CCTGTCGGC 171013 >seq2504 Length=21343 Score = 134 bits (148), Expect = 2e-29 Identities = 102/119 (86%), Gaps = 5/119 (4%) Strand=Plus/Minus Query 142 GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG----GG 197 ||||||||| |||||||||||||||||||||| ||||| |||| |||||||||| | Sbjct 9143 GATAGACTCMTTGAATACATCAGTGTAGCGCGTGTGCGACCCATAACATCTAAGAGCATG 9084 Query 198 CATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||| ||||||||||| |||||||||| ||||||||||| | ||| |||||| || Sbjct 9083 CATCACAAACCTGTTATTGRCTCAAACTTCTGTGGCCTAAAATGDCATAGTCCCTCTAA 9025 >seq825 Length=180694 Score = 91.5 bits (100), Expect = 2e-16 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| | | || |||||||||||| || ||| ||||||||||| |||||||| Sbjct 9289 GTACAAAGGGAACG-ACATAGTCAACGCGAACT-GATTACTCGCGCTTATTAGGAATTGA 9232 Query 61 CTCGTTGAAGACCAACAATTGCAATGATC 89 ||||| |||||||| ||||||||||||| Sbjct 9231 -TCGTTTAAGACCAATAATTGCAATGATC 9204 >seq101 Length=427059 Score = 84.2 bits (92), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||| | ||| ||| |||||| ||| | ||||||| | ||||| ||||||| | Sbjct 34454 GTAAAAAGGGAAAGGATGTACTCAACGGGAG-TYGATGACTGACACTTACAAGGAATT-C 34511 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCAT--CACGATGAAATTTCAAA 115 ||| || || | | ||||||||||| ||||||||| ||| ||||||||| ||| Sbjct 34512 CTCATTTAAAA---ATAATTGCAATGACATATCCCCATCACACAATGAAATTTTAAA 34565 >seq504 Length=182433 Score = 82.4 bits (90), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 5/78 (6%) Strand=Plus/Minus Query 23 CAACGCGAGCTTGATGACTCGCGC--TTACTAGGAATTTCCTCGTTGAAGACCAACAATT 80 || ||||| ||||||||||||| |||| ||||||| |||||| ||||||||||||| Sbjct 59457 CACCGCGACGCTGATGACTCGCGCGCTTACGAGGAATT--CTCGTTTAAGACCAACAATT 59400 Query 81 GCAATGATCTATCCCCAT 98 |||||||||| ||||||| Sbjct 59399 GCAATGATCT-TCCCCAT 59383 >seq29 Length=897557 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||| || ||||||||||||| |||||||||||| ||||| || |||| |||||||| Sbjct 230729 CAGAATATTTAAGGGCATCACATACCTGTTATTGCATCAAATTTTCGTGACCTAAAAG 230786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751936212540