Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3376 513 3e-143 seq73 192 1e-46 seq1385 159 6e-37 seq2615 104 4e-20 seq570 98.7 2e-18 >seq3376 Length=3804 Score = 513 bits (568), Expect = 3e-143 Identities = 302/314 (96%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 988 TGGTCCGACCGGGTCTTTCCTTCTGGGGAGCCGCATGCCCTTCACTGGGTGTGTCGGGGA 929 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 928 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 869 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 868 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 809 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 808 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 749 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 748 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 689 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 688 ACGAAAGTTAGGGG 675 >seq73 Length=736034 Score = 192 bits (212), Expect = 1e-46 Identities = 214/282 (76%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 38 CATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 |||| |||| ||||| | | || | |||| || |||||||||| ||||||||||| Sbjct 620958 CATGGCCTTAACTGGTCGGGTCGTGCCTCCAGTGCTGTTACTTTGAAGAAATTAGAGTGC 620899 Query 98 TCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||| || |||| ||| | ||||||||||||| |||| | ||| || | || | Sbjct 620898 TCAAAACAAGCCTACGCTATGTATACATTAGCATGTGATAACATGATATGATTT-CGATC 620840 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 || | |||| | | ||||| ||||||||||| |||||||||||| | | || Sbjct 620839 TCGTTCTATTGGCCTTCAAGACCGGAGTAATGATTAACAGGGATAGTCGGAGACATTCGT 620780 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || |||| ||||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 620779 ATTTCATAGTCAAAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATT 620720 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| |||||||| |||||||| ||||||||||| |||| Sbjct 620719 TGCCAACGATGTTTTAATTAATCA-AGAACGAAAGTTGGGGG 620679 >seq1385 Length=128055 Score = 159 bits (176), Expect = 6e-37 Identities = 190/250 (76%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACAT-TAGCA 129 || ||||||||||||||||| |||| ||||| || |||| ||| | ||| || || | Sbjct 37313 CTGTTACTTTGAAAAAATTATAGTGCTCAAAACAAGCCTACGCTATATATATATATAATA 37254 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT-TTCTAGGACCGCCGTAATG 188 ||| |||| | |||||| | || | || | ||| || ||| || | || |||||| Sbjct 37253 TGGGATAACATGATAGGATTT-CGATCCTGCTCTGTAGGCCTTCGAG-ATCGGAGTAATG 37196 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||| | |||||| | || ||||| || |||||| |||||||| |||||||| Sbjct 37195 ATTAACAGGAACAGTCGGAGCATTC-GTATTTCATAGTCAGATGTGAAATTGTTGGATTT 37137 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || ||||| ||| ||||||||||| || |||| ||||||||||||| ||| ||||| Sbjct 37136 ATGAAAGACAAACAACTGCGAAAGCATTTGCCAATGATGTTTTCATTACTCAAGAAACGA 37077 Query 309 AAGTTAGGGG 318 ||||| |||| Sbjct 37076 AAGTTGGGGG 37067 >seq2615 Length=13915 Score = 104 bits (114), Expect = 4e-20 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| ||||||||||| |||||| |||||||||| ||||| | ||||||||||| Sbjct 12292 GTATTTCATTGTCAGAGGAGAAATTRTTGGATTTATGAAAGACGGATAACTGCGAAAGCA 12351 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || |||| ||||||||||||||||| |||| |||||| |||| Sbjct 12352 TTTGCCAAMGATGTTTTCATTAATCA-AGAACAAAAGTTGGGGG 12394 >seq570 Length=217942 Score = 98.7 bits (108), Expect = 2e-18 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || || ||| |||||||||||| |||||| ||||| ||| ||||||||| | Sbjct 143863 GTATTTCATAGTTAGATGTGAAATTCTTGAATTTATGAAAGACGAACAACTGCGAAATCA 143922 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || |||| ||| ||||||||||||| ||||||||||| |||| Sbjct 143923 TTTGCCAATGATATTTTCATTAATCA-AGAACGAAAGTTGGGGG 143965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915119865088