Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1385 165 3e-38 seq4123 123 1e-25 seq7616 98.7 4e-18 seq2532 80.6 1e-12 >seq1385 Length=128055 Score = 165 bits (182), Expect = 3e-38 Identities = 212/286 (74%), Gaps = 13/286 (5%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||| |||| ||||||||||||||||| |||||| | ||||||| ||||| | Sbjct 33941 CGGCCCATCTTAAAACACGGACCAAGGAGTTTAACATGTGTGCGAGTCAACGGGTGAGTA 33882 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAA----CCCGTGAGGGT-GCACCA 517 |||| || | || || ||||| | ||| ||| || ||| |||| || ||||| Sbjct 33881 AACCTGTAAGGCGCAA-GAAAG----CTGAG-TGGCAAAAACCCCTTGAGTGTTGCACCG 33828 Query 518 TCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAA 577 ||||| | |||| | | || || ||||||| || || ||| | |||||||| Sbjct 33827 CCGACCAACATTGATCTTCTGAGAAGGGTTTGAGTGTGATGATGCATGTCGAGACCCGAA 33768 Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 |||||||||||||||||||| ||| ||||| |||||||||||| |||||||| |||| Sbjct 33767 AGATGGTGAACTATGCCTGAGCGGGGAGAAGCTAGAGGAAACTCTAGTGGAGGCCCGCAA 33708 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | ||| | ||||||| | ||||| | ||||||||||| |||| Sbjct 33707 TGATACTGACATGCAAATYGTTCGTCTGACTTGGGTATAGGTGCGA 33662 Score = 107 bits (118), Expect = 8e-21 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||| | | |||||||||||||| | |||| | | ||||||| | || ||| ||||||| Sbjct 34321 AGTTGGGATGTTTGGGAATGCAACCCTAATCGAGCTGTAAATTCCGTCCAAAACTAAATA 34262 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 || || | |||||||||| ||||||| || ||||||| ||||| |||||| ||| Sbjct 34261 TTAGCGACAGACCGATAGAAAACAAGTACCACGAGGGAAAGATAAAAAGTACTTTGAAAA 34202 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 | |||| ||| || | ||||||||| | ||| ||| Sbjct 34201 GTGAGTCAAAGAGTGCTTGAAATTGTCAAGAGGAAAG 34165 >seq4123 Length=2705 Score = 123 bits (136), Expect = 1e-25 Identities = 110/135 (81%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 550 AGTAAGAGC-ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| ||||| |||| || | |||||||||||||||||||||||| | ||||||||| Sbjct 661 AGTTAGAGCCATAGTAGT-GCGACCCGAAAGATGGTGAACTATGCTAGCGCAGGGTGAAG 719 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||| ||||| |||||| ||| ||||||||||| |||| | Sbjct 720 TCAGAGGAAACTCTGATGGAAGCTCGAAGCGGTCCTGACGTGCAAATCGGTCGTATGACG 779 Query 669 TGGGTATAGGGGCGA 683 | |||||||||||| Sbjct 780 TTAGTATAGGGGCGA 794 Score = 102 bits (112), Expect = 3e-19 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| | || | || | |||| || ||||| ||||||| Sbjct 91 GAGTCGTGTTGCTTGAAAGTGCAGCGCAAAGTTGGTGATAAACATCATCTAAGGCTAAAT 150 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | || ||||||||| ||||||| |||| ||||| || |||||||| | | Sbjct 151 ATCCCCATGAATCCGATAGCGAACAAGTACTGTGAAGGAAAGTTGCAAAGCACTCCGAAG 210 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 ||||||||||| || |||||||| | | | |||||||| Sbjct 211 AGAGAGTTAAAGAGGACGTGAAACCGATACGATGGAAGCGC 251 >seq7616 Length=4459 Score = 98.7 bits (108), Expect = 4e-18 Identities = 208/296 (70%), Gaps = 27/296 (9%) Strand=Plus/Minus Query 405 CGGCCCG--TCTTGGAACACGGACCAAGGAGTCTAACATCTAT-GCGAGTGTTTGGGT-- 459 ||||||| ||||| ||||||||||||||||||| |||| | | |||||| || Sbjct 3570 CGGCCCGCCTCTTGAAACACGGACCAAGGAGTCTGACATGTGTTGCGAGTTCAACGGCTG 3511 Query 460 -GTCAAACCCGTGCG--CGTAATGAAA---GTGAACGGAGGTGGGAACCCGTGAGGG--- 510 | |||||||| | || || ||| |||| || | | | ||| |||||| Sbjct 3510 AGATAAACCCGTAAGGCCGCAA-GAAGCCGGTGAGTGGCGACG--ATCCCCTGAGGGGTG 3454 Query 511 TGCACCATCGACCGATCCTGATGTCTTCGGATGGATTT-GA-GTAAGAGCATAGCTGTTG 568 ||| | ||||||| | |||| | | || || || || || |||||| |||| | Sbjct 3453 TGCCACGCCGACCGACCTTGATCTTCTGAGAAGGCGTTCGACGTGTGAGCATGCCTGTCG 3394 Query 569 GGACCCGAAAGATGG-TGAACTATGCCTGAA---TAGGGTGAAGCCAGAGGAAACTCTGG 624 || || |||||||| |||||||| ||| | | | |||||||||||||||||||| Sbjct 3393 GGCCCGCAAAGATGGCTGAACTATCACTGGCAGGTGGCGAGAAGCCAGAGGAAACTCTGG 3334 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTG---CAAATCGATCGTCAAATTTGGGTATAG 677 ||||||| ||||| | ||| |||| ||||||| ||||| | |||||||||| Sbjct 3333 TGGAGGCCGCCAGCGATACTGACGTGCCCCAAATCGTTCGTC-TACTTGGGTATAG 3279 >seq2532 Length=11077 Score = 80.6 bits (88), Expect = 1e-12 Identities = 89/112 (79%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 571 ACCCGAAA-GATGGTGAACTATGCCTGAATAGGGTGAA-GCCAGAGGAAACTCTGGTGGA 628 |||||||| ||||| | |||||||||| ||| || |||||||||| |||||||||| Sbjct 8794 ACCCGAAAAGATGGGAATCTATGCCTGACGCGGGGCAACGCCAGAGGAA-CTCTGGTGGA 8736 Query 629 GGCTCGCAGCGGTTCTGG-CGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||| ||||||| | |||| ||| |||| ||||| | |||||||||||| Sbjct 8735 GGCCCGCAGCGATACTGGACGTTGCAATC-TTCGTCTGACTTGGGTATAGGG 8685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079812183800