Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq455 196 1e-47 seq113 145 2e-32 seq400 102 2e-19 >seq455 Length=14957 Score = 196 bits (216), Expect = 1e-47 Identities = 246/334 (74%), Gaps = 14/334 (4%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||||| ||| ||||| | Sbjct 11168 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATA----GGGGGCAAGTG 11113 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 11112 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 11056 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 11055 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 10999 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | | |||||| |||| || Sbjct 10998 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGC 10939 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| |||||| Sbjct 10938 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGG 10879 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 10878 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 10845 >seq113 Length=267136 Score = 145 bits (160), Expect = 2e-32 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| || |||||| ||||||||||||| |||||||| ||| ||| Sbjct 79775 TATCTGGGGAATAAGCATCGACTAACTCTGTGCCAGCAGCCGTGGTAATACAGAGGATGC 79716 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 79715 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 79656 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||| | ||||| |||| | | || | | ||| | | || |||| | || Sbjct 79655 CAAATCTCAGGGCTCAACCCTGRACAGGCGATGGAAACTACCAGGCTGGAGTACGGTAGG 79596 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 79595 GGTAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 79536 Query 243 CGAA 246 |||| Sbjct 79535 CGAA 79532 >seq400 Length=193404 Score = 102 bits (112), Expect = 2e-19 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||| |||||||||||| ||||||||| ||| ||||||||||| Sbjct 83241 GAATAAGCAATGGCTAACACTGTGCCAGCAGCCACGGTAATACAGAGGATGCAAGCGTTA 83182 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | ||||| |||||||| | ||| || | | |||| | | || ||||| | Sbjct 83181 TCCGGAATGATTGGGCTTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCAC 83122 Query 131 CGGGCT 136 ||||| Sbjct 83121 AGGGCT 83116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289487082624