Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq368 113 1e-22 seq5 102 2e-19 seq1291 96.9 9e-18 seq4123 89.7 1e-15 seq2465 84.2 6e-14 >seq368 Length=184475 Score = 113 bits (124), Expect = 1e-22 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 54 AGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTT 113 ||||| ||| ||| ||||| ||| ||| ||||||||||||||||||||||||||| Sbjct 1945 AGACATTGCCTAGATCATTACGTTTTTCRTGCGGGTCGGAACTTACCCGACAAGGAATTT 1886 Query 114 CGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT- 172 || || ||||||||| || | |||| | || ||||| | | |||||||| || ||| Sbjct 1885 CGTTATCTTAGGACCATTTTAGTTATGACCTCCGTTCATCAGGGCTTCGGTCGCCGGCTC 1826 Query 173 ---TCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTA 229 | | | | | ||| | || |||||||| ||| ||||||||||| || | Sbjct 1825 TTCTGTCATCGGGTCACCAACTTCTTTGACCTTCCGACACTAGGCAGGCGTCAGCCCTCA 1766 Query 230 TACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGT 276 ||| | ||| | ||| ||||| ||||||||| |||||||| Sbjct 1765 TACATAGTCTTAAGACTTTACAGAGATTTGTGTTTTTGGTAAACAGT 1719 >seq5 Length=175836 Score = 102 bits (112), Expect = 2e-19 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||| ||||||| || || ||||||| ||| ||| ||||||| ||| |||| Sbjct 11023 CTGCATTTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCG 11082 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 114 ||| || ||||||| |||||||||||||||||||||||||||| Sbjct 11083 TTASGCMTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 11126 >seq1291 Length=53376 Score = 96.9 bits (106), Expect = 9e-18 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 52 GGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 111 |||||||||| | || |||| |||||||| || ||| ||||| || || || Sbjct 39043 GGAGACAGCGGGACAGTCATTACACCATTCGTACAAGTCACTACTTATGCGGAAAAAAAA 39102 Query 112 TTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 |||||||||||||||| |||| ||||| ||||||||||||||||||||| || Sbjct 39103 TTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCAT 39155 Score = 89.7 bits (98), Expect = 1e-15 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 51 TGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 110 ||||||||||| | || |||| |||||||| |||||| ||||| |||||| ||| Sbjct 42159 TGGAGACAGCGGGACAGTCATTACACCATTCGTACAGGTCACTACTTATGCGACAAAGAA 42218 Query 111 TTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 ||||| || ||||||| |||| ||||| | | |||||||||| | |||| || Sbjct 42219 TTTCGTTATTTTAGGACAGTTAGAGTTACTGACCCCGTTTACCGCGACTTCCAT 42272 Score = 84.2 bits (92), Expect = 6e-14 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 52 GGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 111 |||||||||| | || | || |||||||| || ||| ||||| || || || Sbjct 39397 GGAGACAGCGGGACGGTCAT-ACACCATTCGTACAAGTCACTACTTATGCGGAAAAAAAA 39455 Query 112 TTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA 167 |||||||||||||||| |||| ||||| | ||||||||||||||||||| |||| Sbjct 39456 TTCGCTACCTTAGGACAGTTAGAGTTACTGACGCCGTTTACCGGGGCTTCATTCAA 39511 >seq4123 Length=2705 Score = 89.7 bits (98), Expect = 1e-15 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||| |||||||||| ||||||| ||||||||| ||| |||| ||||||||| || Sbjct 2183 TCGTTAATCCATTCGTGCGCGTCGGAAGTTACCCGACGAGGCATTTGGCTACCTTAAGAG 2124 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 || || ||||| ||||||||||| | ||||| || Sbjct 2123 AGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCAAT 2087 >seq2465 Length=5135 Score = 84.2 bits (92), Expect = 6e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | | ||||||| ||||||||| | ||||||||||||| Sbjct 4951 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCG 4892 Query 403 CCTTGGTATTCTCTAC 418 || | |||| |||||| Sbjct 4891 CCCTAGTATACTCTAC 4876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260689604352