Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq368 150 4e-34 seq5 116 8e-24 seq364 95.1 3e-17 seq4123 91.5 3e-16 seq533 91.5 3e-16 seq267 91.5 3e-16 seq148 86.0 1e-14 seq1291 82.4 2e-13 seq2465 78.8 2e-12 seq848 73.4 8e-11 >seq368 Length=184475 Score = 150 bits (166), Expect = 4e-34 Identities = 173/230 (75%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 48 AGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 107 ||||| |||| | ||| ||||| |||| ||||||||||||||||||||||||||||||| Sbjct 1945 AGACATTGCCTAGATCATTACGTTTTTCRTGCGGGTCGGAACTTACCCGACAAGGAATTT 1886 Query 108 CGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT 167 || || ||||||||| || |||||| | || ||||| | |||||| | || | | | Sbjct 1885 CGTTATCTTAGGACCATTTTAGTTATGACCTCCGTTCATCAGGGCTT-CGGTCGCCGGCT 1827 Query 168 CGATTGCTCTAACAGATCCCC-------TTAACCTTCCAGCACCGGGCAGGCGTCAGCTC 220 | || || | | | || || || ||||||| ||| ||||||||||||| | Sbjct 1826 CTTCTG-TC-ATCGGGTCACCAACTTCTTTGACCTTCCGACACTAGGCAGGCGTCAGCCC 1769 Query 221 CTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGT 270 |||||| ||||| ||||| |||| | ||||||||||||||||||| Sbjct 1768 TCATACATAGTCTTAAGACTTTACAGAGATTTGTGTTTTTGGTAAACAGT 1719 >seq5 Length=175836 Score = 116 bits (128), Expect = 8e-24 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||| ||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 11025 GCATTTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 11084 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108 | || ||||||||||||||||||||||||||||||||||||| Sbjct 11085 ASGCMTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 11126 >seq364 Length=175920 Score = 95.1 bits (104), Expect = 3e-17 Identities = 99/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 224 TACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTAT 283 ||||| ||||| ||| || | || || |||||| |||||||||||| | ||||||| Sbjct 103190 TACATGGTCTTACGATTTTTCGGAGACTTGTGTTATTGGTAAACAGTTGTCTGGGCCTGG 103131 Query 284 TCTCTGCGGCC---TGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTG 340 || ||||| || | | || |||||||||||||||| || |||||||| |||||| Sbjct 103130 TCACTGCGACCCCCTTTGTGAGG-AGGCACCCCTTCTCCCGAATTTACGGGGCTATTTTG 103072 Query 341 CCGAGTTC 348 |||||||| Sbjct 103071 CCGAGTTC 103064 >seq4123 Length=2705 Score = 91.5 bits (100), Expect = 3e-16 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||| || |||||||| ||||||| ||||||||| ||| |||| ||||||||| || Sbjct 2183 TCGTTAATCCATTCGTGCGCGTCGGAAGTTACCCGACGAGGCATTTGGCTACCTTAAGAG 2124 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 || |||||||| ||||||||||| | |||| Sbjct 2123 AGTCATAGTTACTCCCGCCGTTTACAAGAGCTT 2091 >seq533 Length=113139 Score = 91.5 bits (100), Expect = 3e-16 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACA 99 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 10884 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACA 10832 >seq267 Length=207416 Score = 91.5 bits (100), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 186 CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245 || || ||||||| |||| || || || ||||| || |||||| |||| || || || Sbjct 104181 CCATTGACCTTCCGGCACTGGACATGCATCAGCCCCCATACATGCTCTTATGAGTTTGCG 104240 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---TGTCATAG 302 || || |||| |||||||||| ||||||| || | | || ||||| || | | || Sbjct 104241 GAGACATGTGCTTTTGGTAAATAGTCGCTCGGAC-TGGTCACTGCGACCCCCTTTGTGAG 104299 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAG 345 |||||||||||||||| ||||||| | | ||||| || || Sbjct 104300 G-AGGCACCCCTTCTCCCGAAGTTACAGAGCTATTTTACCAAG 104341 >seq148 Length=434823 Score = 86.0 bits (94), Expect = 1e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 202 ACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTG 261 || |||||||||||||| || |||||| ||||| |||||| | | ||||||||||||| Sbjct 275802 ACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTACGAAGACCTGTGTTTTTG 275743 Query 262 GTAAACAGTCGCTTGGGCCT 281 ||||||| |||| |||||| Sbjct 275742 GTAAACAATCGCCCGGGCCT 275723 >seq1291 Length=53376 Score = 82.4 bits (90), Expect = 2e-13 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 30 TCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAAC 89 |||||| ||| || ||||||| | | || |||| || ||||| | ||| || Sbjct 39027 TCACCGGGTCCATGTCGGAGACAGCGGGACAGTCATTACACCATTCGTACAAGTCACTAC 39086 Query 90 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGG 149 ||| || || || |||||||||||||||| |||| |||||| |||||||||||| || Sbjct 39087 TTATGCGGAAAAAAAATTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGG 39146 Query 150 GGCTT 154 ||||| Sbjct 39147 GGCTT 39151 >seq2465 Length=5135 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 4956 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTC 4899 >seq848 Length=115280 Score = 73.4 bits (80), Expect = 8e-11 Identities = 93/128 (73%), Gaps = 15/128 (12%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 ||||||||||| |||| |||| | ||| |||||||| ||||||||| || | | Sbjct 12983 ATTTCACCGAGCCTATCTCCGAGAG---GTCCATATCGTTACACCTTTCGTGTCGGCCAG 12927 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 ||||||||| | ||| |||| |||| ||||||||||||| ||||||| | Sbjct 12926 AACTTACCCAA--AGG----------CCTTGGGACTGTTATAGTTACGGGCGCCGTTCAT 12879 Query 147 TGGGGCTT 154 ||||||| Sbjct 12878 CGGGGCTT 12871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062306976256