Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3376 370 2e-100 seq1385 298 9e-79 seq73 233 3e-59 seq60 221 2e-55 seq29 150 3e-34 seq2504 102 1e-19 seq62 78.8 1e-12 >seq3376 Length=3804 Score = 370 bits (410), Expect = 2e-100 Identities = 237/257 (92%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 233 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 234 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGCG 292 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| ||| || |||||||||||||||||||||||||||||||||||| |||||| Sbjct 293 ACCAGCCAAAGCTAGCCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 352 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 353 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 412 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 413 AGAGCTCTCAATCTGTC 429 >seq1385 Length=128055 Score = 298 bits (330), Expect = 9e-79 Identities = 226/268 (84%), Gaps = 20/268 (7%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 36563 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 36622 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC- 120 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 36623 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 36682 Query 121 ---------CACCAAC-CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170 |||| | ||||| ||| |||||||| | |||||||||||||| Sbjct 36683 GTGGAAGGTCACCTCCACATAG---------CTAGTTAGCAGGCTGAGGTCTCGTTCGTT 36733 Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 36734 AACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 36793 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||| ||| |||||| Sbjct 36794 AGAATCAAGAAAGAGCTCTCAGTCTGTC 36821 >seq73 Length=736034 Score = 233 bits (258), Expect = 3e-59 Identities = 208/261 (80%), Gaps = 17/261 (7%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 620184 ACTCGTTGAATACATCAGTGCAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATTACAGA 620243 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||||||||||| | | || || | |||||||||||||||||| ||| Sbjct 620244 CCTGTTATTGCCTCAAACTTCTGTGGCCTAAAATGCCATAGTCCCTCTAAGAAGCTAGCT 620303 Query 122 ACCAACCATAGTCGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || || || | | |||| | ||||||||||||||| | ||| Sbjct 620304 ----------GTGGAAGGTCACCTCCACATAGCTAG---AGGTCTCGTTCGTTAACAGAA 620350 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 620351 TTAACCAGACAAATAGCTCCACCAGCTAAGAACGGCCATGCATCACCACCCATAGAATCA 620410 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||| | ||| |||||| Sbjct 620411 AGAAAGAGTTCTCAGTCTGTC 620431 >seq60 Length=520799 Score = 221 bits (244), Expect = 2e-55 Identities = 178/214 (83%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 345098 ACTCGTTGAATACATCAGTCTAGCGTGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 345039 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 345038 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 344979 Query 122 ACCAACCAT--AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | || | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 344978 ATGGAATGTCACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 344919 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGC 213 ||||||||||||| |||||||||||||||||||| Sbjct 344918 AACCAGACAAATCGCTCCACCAACTAAGAACGGC 344885 >seq29 Length=897557 Score = 150 bits (166), Expect = 3e-34 Identities = 169/225 (75%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 38 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCC 97 ||||| || ||||||||||||| |||||||||||| ||||| || | | || ||| Sbjct 230729 CAGAATATTTAAGGGCATCACATACCTGTTATTGCATCAAATTTTCGTGACCTAAAAGAT 230788 Query 98 AATAGTCCCTCTAAGAAGCCAGCCACCAAC---CATAGTCGATGGGGCTATTTAGCAGGT 154 ||| || || |||||| || | || | || | |||| |||||||| Sbjct 230789 CATAATCTCTGTAAGAATTTAGTTGTGGAAGGTCACA-TCCACATAGCTAGTTAGCAGGC 230847 Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 | || |||| ||||||| |||||||||||||| ||||| |||||||||||||||| Sbjct 230848 TGAGCTCTCATTCGTTAACGGAATTAACCAGAYAAATCGCTCCACCAACTAAGAATAATT 230907 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCC 259 || ||||||||| |||| ||||||||||||||| ||||| ||||| Sbjct 230908 ATCCACCACCACTCATAAAATCAAGAAAGAGCTCTCAATATGTCC 230952 >seq2504 Length=21343 Score = 102 bits (112), Expect = 1e-19 Identities = 88/109 (81%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCAT----CACAGACCTGTTATTG 71 ||||||||||||| ||||| |||| |||||||||| |||| |||| ||||||||||| Sbjct 9124 TCAGTGTAGCGCGTGTGCGACCCATAACATCTAAGAGCATGCATCACAAACCTGTTATTG 9065 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||| | | || || |||||||||||||||||| ||| Sbjct 9064 RCTCAAACTTCTGTGGCCTAAAATGDCATAGTCCCTCTAAGAAGCTAGC 9016 >seq62 Length=794729 Score = 78.8 bits (86), Expect = 1e-12 Identities = 87/107 (81%), Gaps = 7/107 (7%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGC-CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||| ||||||| ||||| ||||| ||||||||| |||||| ||||||| |||| Sbjct 226314 TCAGTGTCGCGCGCG-GCGGCGCCAGA-CATCTAAGG-CATCAC-GACCTGTGGAGGCCT 226369 Query 75 CAAACTTCCATTGGCTGGAAG-CCAATAGTCCCTCTAAGAAGCCAGC 120 ||| ||| | | | || ||| ||| ||||||||||||||||| ||| Sbjct 226370 CAA-CTTACGTGGCCTAAAAGGCCACTAGTCCCTCTAAGAAGCTAGC 226415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796732412436