Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1385 143 5e-32 seq257 143 5e-32 seq937 132 8e-29 seq7616 127 3e-27 seq2161 125 1e-26 seq533 120 5e-25 seq4123 114 2e-23 >seq1385 Length=128055 Score = 143 bits (158), Expect = 5e-32 Identities = 110/129 (85%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 31721 AAAGCAACGCCGCTATGAACGCTTGGCTGCCACATGCCAGTTATCCATGTGGTAACTTTT 31780 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 ||| |||||||| | ||||||| ||| | || | ||||| |||| ||| |||||| | Sbjct 31781 CTGACACCTCTACCTTCAAATTCCGAAGATCT-AGGGATCATTAGGTCACGCTTTCACGA 31839 Query 285 TTTGTATTC 293 || |||||| Sbjct 31840 TTCGTATTC 31848 >seq257 Length=326772 Score = 143 bits (158), Expect = 5e-32 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| Sbjct 83696 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTTTAGCTTCAAA 83755 Query 245 TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||| | ||||||||||| |||||||| |||||| |||| ||||| Sbjct 83756 TTCCGAAGATCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCATATTC 83804 >seq937 Length=108213 Score = 132 bits (146), Expect = 8e-29 Identities = 108/127 (85%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC-TTTTCTG- 227 ||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 25554 AACGTCGTTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAGCTTTTTCTGA 25495 Query 228 GCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTT 286 ||||||| | ||||| | ||| | || ||| ||| | ||||||||||||||| |||| Sbjct 25494 TTACCTCTAACTTCAAACTCCGAAGATCTAAAAAGATTGTTAGGCCACACTTTCACGGTT 25435 Query 287 TGTATTC 293 |||||| Sbjct 25434 CGTATTC 25428 >seq7616 Length=4459 Score = 127 bits (140), Expect = 3e-27 Identities = 133/163 (82%), Gaps = 14/163 (9%) Strand=Plus/Plus Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGAT---CAAAAAGCAACGTCGCTATGAACGC- 186 ||||||| ||||||||||||||||||||| | |||||||||| ||||||||||| Sbjct 1199 GGTATGAATAGAAGAGCCGACATCGAAGGATTAGAATAAAGCAACGTAGCTATGAACGCT 1258 Query 187 TTGGCTGCCACA-AGCCAGTTATCCCTGTG-GTA-ACTTTTCTGGCACC--TCTAGCCTC 241 |||||||||||| |||||||||| ||||| ||| ||||||||| |||| |||||| | Sbjct 1259 TTGGCTGCCACAGAGCCAGTTAT-TCTGTGTGTATACTTTTCTGACACCTGTCTAGCTTT 1317 Query 242 AAATTTCGAGGGACTAAAGGATC-GATAGGCCACA--CTTTCA 281 |||| ||| | ||||| |||| | ||||||||| |||||| Sbjct 1318 CAATTCCGAAGATCTAAA-GATCTGTTAGGCCACATGCTTTCA 1359 >seq2161 Length=60943 Score = 125 bits (138), Expect = 1e-26 Identities = 128/155 (83%), Gaps = 13/155 (8%) Strand=Plus/Minus Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG-CCAC-AAGCCAG- 204 |||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||| Sbjct 29591 CGACCACGAAGGATCAAAAG--AACGTCGCTATGAACGCTTGGCTGCCCACAAAGCCAGT 29534 Query 205 TTATCCCTGTGGTAACTTTT--CTGGCACCTC-TAGCCTCAAATTTCG--AGGGACTAA- 258 |||||||||||||||||||| || |||||| |||| ||||||| || | | |||| Sbjct 29533 TTATCCCTGTGGTAACTTTTTCTTGACACCTCGTAGCTTCAAATTCCGACAAGATCTAAT 29474 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| | |||||| |||||| ||| |||||| Sbjct 29473 AGGATCG-TTGGCCACGCTTTCA-CGTTCGTATTC 29441 >seq533 Length=113139 Score = 120 bits (132), Expect = 5e-25 Identities = 89/103 (86%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| ||| | | || ||||||||||||||||| ||||| ||||||| Sbjct 86749 TACTAGGTTGAATTACTATTACGAC-ACTGTCATCAGTAGGGTAAATCTAACATGTCTCA 86691 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 86690 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGATGGGTGAAC 86648 Score = 116 bits (128), Expect = 6e-24 Identities = 83/94 (88%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 ||||||| |||| | | || |||||||||| |||||| ||||||||||||| |||||||| Sbjct 88380 GAATTACTATTGCGAC-ACTGTCATCAGTAAGGTAAACCTAACCTGTCTCACGACGGTCT 88322 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 |||| |||||| ||||||||||| |||||||||| Sbjct 88321 AAACACAGCTCGCGTTCCCTATTGGTGGGTGAAC 88288 >seq4123 Length=2705 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2705 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTTTTTAGAAAC 2646 Query 246 TTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || |||||||||||||||||| |||||| ||| ||||||| Sbjct 2645 ATACTAACACAAAAGGATCGATAGGCCACCCTTTCAGGGTCTGTATTC 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854325188736