Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq105 174 3e-41 seq387 123 5e-26 seq702 75.2 2e-11 seq821 73.4 8e-11 seq267 73.4 8e-11 >seq105 Length=516322 Score = 174 bits (192), Expect = 3e-41 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 359137 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 359196 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| || | || | | |||||||||||| ||||| Sbjct 359197 GTGCAAAGGTTTCCTCGGGCCGGACGGGAGTTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 359255 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 359256 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 359315 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 359316 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 359365 >seq387 Length=389551 Score = 123 bits (136), Expect = 5e-26 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||||| Sbjct 297423 TTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTG 297482 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 297483 CCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 297530 >seq702 Length=158153 Score = 75.2 bits (82), Expect = 2e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||| || || || ||||| |||||||||| | |||| | ||| || ||||||||||||| Sbjct 125994 AGTACAGAGACAGAAGGGAGTTTGACTGCAAAACCCACCTGTCGAGTAGGGACGAAAGTC 125935 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAA 301 | |||| |||| | ||||| ||| ||||| Sbjct 125934 CGACTTAGTGATATGCCGGTGTTGAGTGGAA 125904 >seq821 Length=116645 Score = 73.4 bits (80), Expect = 8e-11 Identities = 109/152 (72%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 47299 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 47358 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | |||| | |||| | ||| ||| | || | | |||||||||||| |||| Sbjct 47359 GTGCAAACGTTTCCTCGGGCCGGACGGAGA-TTGGCCCTCGAGTGCAAAGGCAGGAGGGA 47417 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGG 261 | |||||||| | |||| | ||| ||||||| Sbjct 47418 GCTTGACTGCAAGACCCACCCGTCGAGCAGGG 47449 >seq267 Length=207416 Score = 73.4 bits (80), Expect = 8e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 237 TGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAA 296 ||| | |||| | ||| ||||||||||||| |||| |||| ||||||| |||||| || Sbjct 106253 TGCAAGACCCACCCGTCAAGCAGGGACGAAAATCGGCCTTAGTGATCCGACGGTGCCGAG 106312 Query 297 TGGAACGGCCGTCGCTC 313 ||| |||| |||||||| Sbjct 106313 TGG-ACGGGCGTCGCTC 106328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982313981056