Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq455 172 1e-40 seq96 75.2 2e-11 >seq455 Length=14957 Score = 172 bits (190), Expect = 1e-40 Identities = 165/205 (80%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 |||||| ||| |||||| |||| ||||||| |||||||||||||||||||| |||||| Sbjct 11221 CCTTCTC-CACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 11278 Query 77 CACTGCTGCCTCCCGTAGGAGT--CTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 |||||||||| ||||| ||||| | | | |||||||||| |||||||| ||||||||| Sbjct 11279 CACTGCTGCC-CCCGTGGGAGTCGCGGCGCGGTGTCTCAGTCCCAGTGTGGCTGATCATC 11337 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 | ||||||| || | ||| | | |||||| |||| |||||| |||||||| ||||| Sbjct 11338 CGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATA 11397 Query 195 CGACCTAGG-CTCATCTGATAGCGC 218 | || ||| |||||| | ||||| Sbjct 11398 CTACGCAGGCCTCATCAAACAGCGC 11422 >seq96 Length=448200 Score = 75.2 bits (82), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA-TCATC 134 || |||||||||||||| || |||||| ||||||||| || || ||||| |||| || || Sbjct 167597 CCCCTGCTGCCTCCCGTCGGCGTCTGGGCCGTGTCTC-GTCCCCGTGTGGCTGATTCCTC 167539 Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 ||||| | || || | | |||| ||||| ||| || ||| |||||| |||| || Sbjct 167538 CTCTCGGCCCCGTCCTGCTCCATCGCTTTGGTCCGCCCTT-GCTCCCCAACTCGCTACTC 167480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071906135680