Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4014 315 3e-83 seq2465 150 7e-34 seq6963 138 4e-30 seq161 93.3 2e-16 seq182 91.5 5e-16 seq250 86.0 2e-14 seq913 80.6 1e-12 >seq4014 Length=1690 Score = 315 bits (348), Expect = 3e-83 Identities = 385/518 (74%), Gaps = 12/518 (2%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAA-CACGCGACGCTGCA 142 ||||||| |||||| ||||||||||||||||| || | | | ||||||| || | Sbjct 2 TGTGGGCGGCCCTAGCCCATCCAGTGCTCTACC-CCTCAAGGTATTCACGCGAGGCGCTA 60 Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202 ||||||| ||||| |||||||||||||| | |||||||||||||||||||||||| Sbjct 61 CCTAAATAGCTTTCGCGGAGAACCAGCTATTTCCGAGTTTGATTGGCCTTTCACCCCTAG 120 Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262 ||||| ||||||| |||||||| ||||||| |||||| ||| ||||| Sbjct 121 CCACACGTCATCCAAGACCTTTTCAACGGGCACTGGTTCGGACCTCCAGTGGGTGTTACC 180 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322 | ||||| ||||| ||||| ||||||||| | ||||||||| | | ||| | Sbjct 181 CCACCTTCATCCTGCACATGGCTAGATCACTCGGTTTCGGGTCTAAAGCAACGAACTGA- 239 Query 323 ACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACA 382 ||||||| ||| |||||||||||||| | |||| || ||| |||| || || | Sbjct 240 ACGCCCTGTTCAGACTCGCTTTCGCTGTGCCTACACCTACCGGCTTAAGCTTGCT-CGTT 298 Query 383 ACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCAC 442 || || |||| | | |||| | ||||||| |||| ||||| | || | | Sbjct 299 ACTTTAAGTCGCTGACCCATTATACAAAAGGTACGCGGTCACTCAGAACGAAT------C 352 Query 443 TTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCA-GGG 501 || |||||| || | ||||| ||| ||||||||| ||| ||||||||||| | ||| Sbjct 353 TTGAGCTCCCACTGTTTGTAAGCATCCGGTTTCAGGAACTGTTTCACTCCCCTCGTCGGG 412 Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || |||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||| Sbjct 413 GTGCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCGCTGAGGAGTACTTAGG 472 Query 562 CTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||| |||||||||| ||| |||| || |||||| Sbjct 473 CTTGGAGGGTGGTCCCCCCATGTTCAGACAGGATTTCA 510 >seq2465 Length=5135 Score = 150 bits (166), Expect = 7e-34 Identities = 355/525 (68%), Gaps = 47/525 (9%) Strand=Plus/Minus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 3770 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 3711 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 3710 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 3651 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 3650 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 3591 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||||||||| ||||| |||||| | | |||||||| || | | | | | Sbjct 3590 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG 3532 Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAA 383 |||| || || | | | || |||| || | || |||| || | | || Sbjct 3531 ----ATTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCAT 3480 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC------CTA- 434 | ||||| | | ||| | ||||||| ||||||| | || || | ||| Sbjct 3479 TTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCTTTACTAA 3423 Query 435 -------------AAAGGCACT----TCAGCTC---CGACGGATTGTAGGCACATGGTTT 474 |||||| || || |||| |||| |||||| ||| | | | Sbjct 3422 TCGTTTCGAAAGTAAAGGCTCTAAGCTCCGCTCCTTCGACTGATTGTTCGCATCGGATCT 3363 Query 475 CAGGT--ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGT 532 ||||| ||||| ||||||| |||| |||||||||||||||||||||||||||| Sbjct 3362 CAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGT 3303 Query 533 CCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||||||||||| |||| || ||||||||| |||||||||| Sbjct 3302 ACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 3258 >seq6963 Length=998 Score = 138 bits (152), Expect = 4e-30 Identities = 123/153 (80%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCA-GGGGTACT 506 |||| || | ||||||||| |||||||||||| ||||||||||| | ||||| || Sbjct 996 CTCCAACTGCTTGTAGGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGTGCT 937 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAA 566 ||||||||||||||||||||||| || | ||||||||| | | |||||||||||||| Sbjct 936 TTTCACCTTTCCCTCACGGTACTAGTTCACTATCGGTCGCATACGAGTATTTAGGCTTGG 877 Query 567 CGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||| ||| ||| ||||| || |||| || Sbjct 876 AGGGTGGGCCCCCCATATTCAGACAGAATTACA 844 >seq161 Length=464394 Score = 93.3 bits (102), Expect = 2e-16 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202 ||| || |||||||||||||||||||||| | | | | || |||| ||||||||||| Sbjct 422782 CCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGCTCGAGTGGCATTTCACCCCTAA 422723 Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 ||||| |||||| | |||||||||| ||| ||||| | ||||||| Sbjct 422722 CCACAACTCATCCGGTGGTTTTTCAACCTCAGTCGGTTCAGACCTCCAC 422674 >seq182 Length=216592 Score = 91.5 bits (100), Expect = 5e-16 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||||||||| ||||||||| | ||| || |||| |||||| Sbjct 119686 GCTGCGCCTCAACACATTTCGGGGACAACCAGCTAGTTCTGGGTTCGAGTGGCATTTCAC 119627 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 | ||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| Sbjct 119626 CACTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCAC 119572 >seq250 Length=226961 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 481 CTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540 ||||| ||||||| |||| |||||| | ||||||||||||||||||| | ||||| Sbjct 153392 CTATTGCACTCCCTAAATAGGGTTCTTTTCTCTTTTCCCTCACGGTACTTGTACTCTATC 153333 Query 541 GGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||||| || | || ||||||||| |||||||||| Sbjct 153332 GGTCATTGAGTAATACTTAGGCTTAGAGGGTGGTCCC 153296 >seq913 Length=146771 Score = 80.6 bits (88), Expect = 1e-12 Identities = 96/132 (73%), Gaps = 9/132 (7%) Strand=Plus/Minus Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 ||||||| | || ||||||| || ||| ||||| ||||||||| |||||||||||| Sbjct 79184 ATGGTTTAATGTTCTATTTCCCTTTCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGT- 79126 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 |||||||||| | | |||||||||| |||| |||||||| ||||| Sbjct 79125 --------CTATCGGTCAACCAAGAGTATTTAGCCTTACAAGGTGGTCCTTGATGATTCG 79074 Query 588 CACGAAATTTCA 599 |||| ||| || Sbjct 79073 CACGTGATTCCA 79062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817440850944