Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq4014 311 2e-82 seq6963 185 2e-44 seq22 104 6e-20 seq2465 102 2e-19 seq250 93.3 1e-16 seq913 89.7 1e-15 >seq4014 Length=1690 Score = 311 bits (344), Expect = 2e-82 Identities = 317/400 (79%), Gaps = 14/400 (4%) Strand=Plus/Plus Query 27 ACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTG 86 || |||||||||| ||||||| |||||||| || ||||||| ||||| || |||| Sbjct 137 ACCTTTTCAACGGGCACTGGTTCGGACCTCCAGTGGGT-GTTACCCCACCTT-CATCCTG 194 Query 87 CCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGACGCCCTAGTA 145 | ||| || |||||| | |||||| |||||||| | | ||| || ||||||| | Sbjct 195 CACAT-GGCTAGATCACTCGGTTT-CGGGTCTAAAGC--AACGAACTGAACGCCCTGTTC 250 Query 146 AGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTC 204 ||||||||||| |||| |||| | |||| | |||||||| || | | |||||| Sbjct 251 AGACTCGCTTT-CGCTGTGCCTACACCTACCGGCTTAAGCTT-GCTCGTTACTTTAAGTC 308 Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG--TGGGCTCCCACTGCT 260 |||||||||||||||||||||||||| ||||| || || || || |||||||||| | Sbjct 309 GCTGACCCATTATACAAAAGGTACGCGGTCACTCAGAACGAATCTTGAGCTCCCACTGTT 368 Query 261 TGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTC 320 |||| |||| ||||||||||| || ||||||||||||| |||||| |||||| |||||| Sbjct 369 TGTAAGCATCCGGTTTCAGGAACTGTTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTC 428 Query 321 CCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCC 380 |||||||||||| |||| ||||||||| | || |||| |||| |||||||| ||||||| Sbjct 429 CCTCACGGTACTTGTTCGCTATCGGTCGCTGAGGAGTACTTAGGCTTGGAGGGTGGTCCC 488 Query 381 CCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| |||||||| |||| |||| ||| |||||||| Sbjct 489 CCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCG 528 >seq6963 Length=998 Score = 185 bits (204), Expect = 2e-44 Identities = 143/170 (84%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| |||||||||| ||| | |||||||| || ||||||||||||| |||||| || Sbjct 996 CTCCAACTGCTTGTAGGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGTGCT 937 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| ||||||||||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 936 TTTCACCTTTCCCTCACGGTACTAGTTCACTATCGGTCGCATACGAGTATTTAGGCTTGG 877 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||| ||| ||||||||||||||||| | || | |||| |||| ||||||| Sbjct 876 AGGGTGGGCCCCCCATATTCAGACAGAATTACACGTGTTCCGCCCTACTC 827 >seq22 Length=845612 Score = 104 bits (114), Expect = 6e-20 Identities = 146/199 (73%), Gaps = 12/199 (6%) Strand=Plus/Plus Query 138 CCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGA 195 ||||| |||||||||||| ||||||| |||| | ||| |||| | ||||||| Sbjct 804465 CCCTATGAAGACTCGCTTT-CGCTACGGCTCCGTTGGGTTCCCTTAACCAA-GCCACTGC 804522 Query 196 AAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCC-- 253 || |||||| | | |||| | ||| ||| || |||||| | ||||||| Sbjct 804523 CTATGAGTCGCCGGCTCATTCTTCAACAGGCACACAGTCAGAGCTCC----GGGCTCCTT 804578 Query 254 -CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312 ||||||||| || |||||||||| | |||||||||| |||| | ||||||||||| Sbjct 804579 CCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACCCCCCGATG-GGGGTTCTTTT 804637 Query 313 CGCCTTTCCCTCACGGTAC 331 | || |||||||||||||| Sbjct 804638 CACCCTTCCCTCACGGTAC 804656 >seq2465 Length=5135 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 3384 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 3326 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 3325 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 3266 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 3265 GTGGTCCCCC 3256 >seq250 Length=226961 Score = 93.3 bits (102), Expect = 1e-16 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 |||||| ||||||| | ||||||||||| | |||||||||||||||| || | ||| Sbjct 153393 TCTATTGCACTCCC-TAAATAGGGTTCTTTTCTCTTTTCCCTCACGGTACTTGTACTCTA 153335 Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCC 382 ||||||| | |||| || |||| ||| |||| ||||||||| Sbjct 153334 TCGGTCATTGAGTAATACTTAGGCTTAGAGGGTGGTCCCCC 153294 >seq913 Length=146771 Score = 89.7 bits (98), Expect = 1e-15 Identities = 163/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 147 GACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTC 204 |||||| ||||||||||| |||| || ||| |||| | |||| | || |||| Sbjct 79307 GACTCGTTTTTCGCTACGGCTCCGGTAGGTTCCCTTAACCAA-GCCATCGCTCATGAGTC 79249 Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTA 264 | ||| |||| | ||| ||| || |||| || || | |||||||||||| Sbjct 79248 GGCGACTCATTCTTCAACAGGCACATGGTCAGAGC-CATAGAGTCATCCCACTGCTTGGG 79190 Query 265 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 324 || || ||||| | | |||||||| || || | |||||||||||| || ||||||| Sbjct 79189 AGCTTATGGTTTAATGTTCTATTTCCCTTTCCGATG-GGGGTTCTTTTCACCCTTCCCTC 79131 Query 325 ACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 ||||| |||||||||| || ||||||||||||| | | |||||| Sbjct 79130 ACGGT---------CTATCGGTCAACCAAGAGTATTTAGCCTTACAAGGTGGTCC 79085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241491285504