Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2465 167 5e-39 seq3285 120 7e-25 seq1196 98.7 2e-18 >seq2465 Length=5135 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 4047 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 3991 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 3990 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 3931 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 3930 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 3871 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 3870 GTTTCCCTCTCG 3859 >seq3285 Length=6944 Score = 120 bits (132), Expect = 7e-25 Identities = 112/140 (80%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 214 TTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCT 273 |||||| ||| |||| |||||| | ||| ||||||| | | || || ||||||||| Sbjct 2612 TTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCT 2555 Query 274 ATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACT 333 ||||||||||||||||||| |||||||||| | || |||||||||| ||||| ||| | Sbjct 2554 ATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCC 2495 Query 334 CCACATCCTTTCCCACTGAG 353 | || |||||| ||||||| Sbjct 2494 CTACCTCCTTTATCACTGAG 2475 >seq1196 Length=48805 Score = 98.7 bits (108), Expect = 2e-18 Identities = 156/211 (74%), Gaps = 17/211 (8%) Strand=Plus/Plus Query 206 GCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACAT-TATCGGCGCGGAATCACTT-GA 263 |||||||||||||| ||| |||| ||| | | ||| | |||||| || ||| || Sbjct 5305 GCCACAGCTTCGGCAGATCGCTTAGGCCGCCGTTCATCTTGCGGCGCAGAGCGGCTTCGA 5364 Query 264 CCAGTGAGCTATTACGC--ACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGG-- 319 |||||||||||||||| || | |||||| |||||||||| || |||||||||| Sbjct 5365 TCAGTGAGCTATTACGCCTCCTTTCTCAAGG-TGGCTGCTTCTGCGCAAACCTCCTGGGC 5423 Query 320 TTGT--CTACGCAACTC---CACATC--CTT-TCCCA-CTGAGTCACCACTTAGGGGCCT 370 |||| || | || | || || ||| | || ||||| | || |||||||||| Sbjct 5424 TTGTTCCTCTGGCACCCGCTAACCTCGGCTTGTATCACCTGAGCGATCATTTAGGGGCCT 5483 Query 371 TAGCTGATGATCTGGGCTGTTT-CCCTCTCG 400 |||||| ||||| ||||||||| |||||||| Sbjct 5484 TAGCTGGTGATCCGGGCTGTTTCCCCTCTCG 5514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177496889344