Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq113 140 5e-31 seq455 138 2e-30 seq400 93.3 7e-17 >seq113 Length=267136 Score = 140 bits (154), Expect = 5e-31 Identities = 177/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 47 TTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGAT 106 |||||| |||||||| | | || |||||||||||||||||| ||| | |||||| Sbjct 79532 TTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTC 79591 Query 107 TGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGT 166 | || || | | |||| || |||||| | || | ||||||||||| || Sbjct 79592 TACCCCTACCGTACTCCAGCCTGGTAGTTTCCATCGCCTGTYCAGGGTTGAGCCCTGAGA 79651 Query 167 TTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAAC 226 ||| || | ||||| || |||||| | |||||| |||||| | |||||||||| Sbjct 79652 TTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAAC 79711 Query 227 GCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 |||||| ||| |||||||| ||||||||||||| |||||| || ||||||||| || Sbjct 79712 GCTTGCATCCTCTGTATTACCACGGCTGCTGGCACAGAGTTAGTCGATGCTTATTCCCCA 79771 Query 287 GGTA 290 | || Sbjct 79772 GATA 79775 >seq455 Length=14957 Score = 138 bits (152), Expect = 2e-30 Identities = 205/288 (71%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 10890 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 10949 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 10950 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 11009 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | | || | | | |||||| | Sbjct 11010 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 11064 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| ||| Sbjct 11065 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCT 11124 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 11125 A----TTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 11168 >seq400 Length=193404 Score = 93.3 bits (102), Expect = 7e-17 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | ||||| |||||| | |||||||||||||||| ||| |||||||| Sbjct 83147 CCACCTACAGACGCTTTAAGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACC 83206 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 | |||||||||||| ||||||| | ||||||||| || Sbjct 83207 GTGGCTGCTGGCACAGTGTTAGCCATTGCTTATTCCCCA 83245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828729698076