Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3376 291 8e-77 seq73 98.7 1e-18 seq1385 75.2 1e-11 >seq3376 Length=3804 Score = 291 bits (322), Expect = 8e-77 Identities = 180/191 (94%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 931 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATA 872 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 871 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 813 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 812 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 753 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 752 TTGGATTTATT 742 >seq73 Length=736034 Score = 98.7 bits (108), Expect = 1e-18 Identities = 140/191 (73%), Gaps = 11/191 (6%) Strand=Plus/Minus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACAT 63 |||| || |||||||||| ||||||||| | ||||| || |||| ||| | |||||| Sbjct 620930 CCAGTGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAACAAGCCTACGCTATGTATACAT 620871 Query 64 TACCATGGAATAATAGAATAGGA---CGTGCG-GTTCTATTTTGTAGGTTTCTAGGACCG 119 || |||| |||| | ||| || || | |||||||| | ||| || |||| Sbjct 620870 TAGCATGTGATAACATGATATGATTTCGATCTCGTTCTATTG----GCCTTCAAG-ACCG 620816 Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179 |||||||| || | |||||||||| | | ||||| || ||||||||||||||| Sbjct 620815 GA-GTAATGATTAACAGGGATAGTCGGAGACATTCGTATTTCATAGTCAAAGGTGAAATT 620757 Query 180 CTTGGATTTAT 190 ||||||||||| Sbjct 620756 CTTGGATTTAT 620746 >seq1385 Length=128055 Score = 75.2 bits (82), Expect = 1e-11 Identities = 132/183 (72%), Gaps = 7/183 (4%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACAT-TACCA 68 || ||||||||||||||||| || | ||||| || |||| ||| | ||| || || | Sbjct 37313 CTGTTACTTTGAAAAAATTATAGTGCTCAAAACAAGCCTACGCTATATATATATATAATA 37254 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGG-TTTCTAGGACCGCCCGTAAT 127 ||| |||| | |||||| | || | || | |||||| ||| | || || ||||| Sbjct 37253 TGGGATAACATGATAGGA-TTTCGATCCTGCTCTGTAGGCCTTCGA-GATCG-GAGTAAT 37197 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| || | | | |||||| | || ||||| || |||| | |||||||| ||||||| Sbjct 37196 GATTAACAGGAACAGTCGGAGCATTC-GTATTTCATAGTCAGATGTGAAATTGTTGGATT 37138 Query 188 TAT 190 ||| Sbjct 37137 TAT 37135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511956570240