Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq455 244 3e-62 seq113 111 5e-22 seq400 93.3 1e-16 >seq455 Length=14957 Score = 244 bits (270), Expect = 3e-62 Identities = 263/342 (77%), Gaps = 12/342 (4%) Strand=Plus/Minus Query 155 AGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAG 214 || || |||| ||||| |||||||| |||||| |||| |||||| | | ||| ||| Sbjct 11409 AGGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAG 11350 Query 215 CCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAA--ACTCCTACGG 272 | | || || ||||| |||||| ||| |||||||||| | | ||||| |||| Sbjct 11349 CTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACCGCGCCGCGACTCCCACGG 11290 Query 273 GAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGA 332 | |||||||||||||||| ||| ||||||||| |||||| ||| |||||| ||||||| Sbjct 11289 G-GGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGA 11231 Query 333 GCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTAC 388 | | ||||| | | | | |||||||||||| || || || | || ||||| | || Sbjct 11230 GTGGAGAAGGGCAATGCCGCTCGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGAC 11171 Query 389 TTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAG 448 | ||||| |||||||||||||||| |||||||||||||||||||| |||||||| || Sbjct 11170 TCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAA----TAGGGGGCAAG 11115 Query 449 CGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 ||| | |||||| ||| |||||||||||| |||||| ||| Sbjct 11114 TGTTCTTCGGAATGACT-GGGCGTAAAGGGCACGTAGGCGGT 11074 >seq113 Length=267136 Score = 111 bits (122), Expect = 5e-22 Identities = 99/123 (80%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || ||| |||| || |||||| ||||||||||||| |||||||| Sbjct 79783 AATGACGGTATCTGGGGAATAAGCATCGACTAACTCTGTGCCAGCAGCCGTGGTAATACA 79724 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||| || ||||||||||||||| | | |||||||||| || |||||||| || |||| Sbjct 79723 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAA 79665 Query 498 GTC 500 ||| Sbjct 79664 GTC 79662 >seq400 Length=193404 Score = 93.3 bits (102), Expect = 1e-16 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||||||| | | ||| |||| ||||||| |||||||||||| ||||||||| Sbjct 83256 AATGACGGTTATGG-GGAATAAGCAATGGCTAACACTGTGCCAGCAGCCACGGTAATACA 83198 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||| || ||||||||||||||| | | |||| ||||| || |||||||| || |||| Sbjct 83197 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCTTAAAGCGTCTGTAGGTGGCTTTTTAA 83139 Query 498 GTC 500 ||| Sbjct 83138 GTC 83136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497468870144