Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq455 221 3e-55 seq113 159 8e-37 seq400 95.1 3e-17 seq1838 87.8 4e-15 >seq455 Length=14957 Score = 221 bits (244), Expect = 3e-55 Identities = 255/340 (75%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 11172 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATA----GGGGGCA 11117 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 11116 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 11057 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 11056 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 11003 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || |||| | | |||||| ||| Sbjct 11002 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAA 10943 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 10942 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 10883 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 10882 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 10843 >seq113 Length=267136 Score = 159 bits (176), Expect = 8e-37 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| || |||||| ||||||||||||| |||||||| ||| || ||| Sbjct 79771 TGGGGAATAAGCATCGACTAACTCTGTGCCAGCAGCCGTGGTAATACAGAGGATGCAAGC 79712 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 79711 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 79652 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | |||||||||| | || | |||||| | |||| |||| | | ||||| | Sbjct 79651 TCTCAGGGCTCAACCCTGRACAGGCGATGGAAACTACCAGGCTGGAGTACGGTAGGGGTA 79592 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 79591 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 79532 >seq400 Length=193404 Score = 95.1 bits (104), Expect = 3e-17 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79 ||||||| |||||||||||| ||||||||| ||| || ||||||||||||||| | Sbjct 83230 GGCTAACACTGTGCCAGCAGCCACGGTAATACAGAGGATGCAAGCGTTATCCGGAATGAT 83171 Query 80 TGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114 ||||| ||||| || |||||||| || ||||||| Sbjct 83170 TGGGCTTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 83136 >seq1838 Length=70402 Score = 87.8 bits (96), Expect = 4e-15 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGA 178 || ||| ||| |||||||||| | || | |||||| | ||| ||| | | Sbjct 27403 GTCAAATCCTAGGGCTCAACCCTGAACAGGCGGTGGAAACTACTAAGCTCAAGTAAGGTA 27462 Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 |||| | |||||| | || |||||||||||||||||| || | ||||||| Sbjct 27463 GGGGTAGAGGGAATTTCCGATGAAGCGGTGAAATGCGTAGAGATCGAAAATAACACCAAC 27522 Query 239 GGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAAC 298 | |||| || |||| | | ||| |||||||| ||||| | || ||||||| Sbjct 27523 GACGAAAGCA-----CTGGCC-GACACTAACACTGAGAGACGAAACCTAGGAGAGCAAAT 27576 Query 299 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 |||||| |||||| || ||| ||||||||||||| |||||||| || Sbjct 27577 GGGATTAAATACCCCATTATTCCTAGCCGTAAACGATGGATACTAGGCGT 27626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203094647808