Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3376 486 4e-135 seq73 260 3e-67 seq1385 159 7e-37 seq60 159 7e-37 seq2504 95.1 2e-17 seq62 89.7 1e-15 seq825 80.6 5e-13 >seq3376 Length=3804 Score = 486 bits (538), Expect = 4e-135 Identities = 293/309 (95%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| ||| |||||||| |||||| |||||||||| Sbjct 338 GAACGAGACCTTAACCTGCTAAATAGCCCGGCTAGCTTTGGCTGGTCGCTGGCTTCTTAG 279 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 278 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 219 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct 218 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTTTTCTCCTTGACCG 159 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 158 AAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 99 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 98 CTCTTCAACGAGGAATGCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 39 Query 320 CCCTTTGTA 328 || |||||| Sbjct 38 CCTTTTGTA 30 >seq73 Length=736034 Score = 260 bits (288), Expect = 3e-67 Identities = 216/260 (83%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||||| ||| | || | | ||||||||||||||||||||||||| Sbjct 620298 GCTTCTTAGAGGGACTAT-GGCATTTTAGGCCACAGAAGTTTGAGGCAATAACAGGTCTG 620240 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 | ||||||||||||||||||||||||||||||||| |||||| | |||||||| || Sbjct 620239 TAATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTGCACTGATGTATTCAACGAGTCTAT 620180 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||||| || || | || |||| || | ||| | | || || |||||||||| ||| Sbjct 620179 AACCTTGGTCGACAGTCCCGGATAATTTT-TGAAATTTTATCATGATGGGGATAGATCAT 620121 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| ||| |||| ||||| |||| | ||||||||||| ||||||||| |||||||| Sbjct 620120 TGCAATTGTTGGTCTTAAACGATGAATTCATAGTAAGCGCGAGTCATCAGCTCGCGTTGA 620061 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 620060 CTACGTCCCTGCCCTTTGTA 620041 >seq1385 Length=128055 Score = 159 bits (176), Expect = 7e-37 Identities = 114/130 (88%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || || | | ||||||||||||||||||||||||||| Sbjct 36677 GCTTCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 36618 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 36617 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATA 36558 Query 190 ACCTTGGCCG 199 |||||||||| Sbjct 36557 ACCTTGGCCG 36548 Score = 141 bits (156), Expect = 2e-31 Identities = 103/118 (87%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 211 TAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGA 270 ||||||| | ||| | ||||| |||||||||| |||||||||| ||| |||| ||||| Sbjct 35514 TAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTAAACGA 35456 Query 271 GGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 35455 GGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 35398 >seq60 Length=520799 Score = 159 bits (176), Expect = 7e-37 Identities = 125/148 (84%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || || | | ||||||||||||||||||||||||||| Sbjct 344984 GCTTCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 345043 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||| ||||| ||||| | |||||||| || Sbjct 345044 GATGCCCTTAGATGTTCTGGGCCGCACGCACGCTAGACTGATGTATTCAACGAGTCTATA 345103 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTT 217 |||||||||| ||| | | |||||||| Sbjct 345104 ACCTTGGCCGACAGGCCCGAGTAATCTT 345131 >seq2504 Length=21343 Score = 95.1 bits (104), Expect = 2e-17 Identities = 86/106 (81%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||||| | | | || | | |||||||||| ||||||||||| || Sbjct 9020 GCTTCTTAGAGGGACTAT-GHCATTTTAGGCCACAGAAGTTTGAGYCAATAACAGGTTTG 9078 Query 129 TGATGCC----CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||| |||||||||| |||| ||||| ||||||||||||| Sbjct 9079 TGATGCATGCTCTTAGATGTTATGGGTCGCACACGCGCTACACTGA 9124 >seq62 Length=794729 Score = 89.7 bits (98), Expect = 1e-15 Identities = 143/192 (74%), Gaps = 19/192 (10%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||||| ||| | || | | | ||| ||||||| ||||||| | Sbjct 226411 GCTTCTTAGAGGGACTAGTGGCCTTTTAGGCCACGTAAG-TTGAGGCCTCCACAGGTC-G 226354 Query 129 TGATGCCCTTAGATGTTCTGG-GCCGCACGCGCGCTACACTGACAGAGCCA----ACGAG 183 ||||| ||||||||| ||||| ||||| ||||||| ||||||| || | ||||| Sbjct 226353 TGATG-CCTTAGATG-TCTGGCGCCGC-CGCGCGCGACACTGA---TGCTATTTCACGAG 226300 Query 184 TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 | || || |||||| ||| | |||| ||||| | ||| ||||| ||||||||| Sbjct 226299 TCTATAAC--TGGCCGACAGGCCCGGGT-ATCTT-TGAAATGTCATCGTGATGGGGATAG 226244 Query 244 AGCATTGCAATT 255 | |||||||||| Sbjct 226243 ATCATTGCAATT 226232 >seq825 Length=180694 Score = 80.6 bits (88), Expect = 5e-13 Identities = 70/86 (81%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 || |||||||||||||| |||| ||||| ||| |||| |||||||| || ||||| || Sbjct 9204 GATCATTGCAATTATTGGTCTTAAACGATCAATTCCTAATAAGCGCGAGTAATCAGTTCG 9263 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| || || | | ||||||||| Sbjct 9264 CGTTGACTATGT-CGTTCCCTTTGTA 9288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947117063168