Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq4014 214 6e-53 seq2465 183 1e-43 seq182 91.5 5e-16 seq161 78.8 3e-12 >seq4014 Length=1690 Score = 214 bits (236), Expect = 6e-53 Identities = 197/247 (80%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| |||||||||| |||| | | | ||||||||||||| ||||||||| |||| Sbjct 257 CGAGTCTGAACAGGGCGTTCAGTTCGTTGCTTTAGACCCGAAACCGAGTGATCTAGCCAT 198 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | ||||||||||||| |||||||| | ||||||||||||||| |||||||| Sbjct 197 GTGCAGGATGAAGGTGGGGTAACACCCACTGGAGGTCCGAACCAGTGCCCGTTGAAAAGG 138 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||| ||||| |||||||||||||| || |||||| ||||||||||||||||| Sbjct 137 TCTTGGATGACGTGTGGCTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGTTCTC 78 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGT-ATCACCATCGGGGGTAGAGCACTGTTATG 239 ||||| |||||||||||| ||||| || | ||| | |||||||||||||| | Sbjct 77 CGCGAAAGCTATTTAGGTAGCGCCTCGCGTGAATACCTTGAGGGGTAGAGCACTGGATGG 18 Query 240 GCTAGGG 246 ||||||| Sbjct 17 GCTAGGG 11 >seq2465 Length=5135 Score = 183 bits (202), Expect = 1e-43 Identities = 323/461 (70%), Gaps = 26/461 (6%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 3551 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 3610 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 3611 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 3670 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 3671 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 3728 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| || |||||||| | Sbjct 3729 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 3788 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| || || |||||| Sbjct 3789 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTAC----AGACAGACTTTTTGGGTG 3844 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 3845 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 3904 Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| |||| || | |||| | |||| || ||||||||||| Sbjct 3905 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 3960 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 3961 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 4000 >seq182 Length=216592 Score = 91.5 bits (100), Expect = 5e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 |||||||||||||| ||| |||||||| ||| || ||||||| ||||| ||| ||||||| Sbjct 119573 TGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGTGGTGAAA 119632 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 || | | ||| ||| ||||||||| || |||||| Sbjct 119633 TGCCACTCGAACCCAGAACTAGCTGGTTGTCCCCGAAA 119670 >seq161 Length=464394 Score = 78.8 bits (86), Expect = 3e-12 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 |||||||| ||||| ||| | ||||||||| | ||||||| ||||| ||||||||||| Sbjct 422675 TGGAGGTCTGAACCGACTGAGGTTGAAAAACCACCGGATGAGTTGTGGTTAGGGGTGAAA 422734 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 || | | | | || |||||||||||| |||||| Sbjct 422735 TGCCACTCGAGCCCAGAGCTAGCTGGTTCTCCCCGAAA 422772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689452058624