Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq6963 123 5e-26 seq4014 102 1e-19 seq2465 80.6 5e-13 >seq6963 Length=998 Score = 123 bits (136), Expect = 5e-26 Identities = 192/280 (69%), Gaps = 56/280 (20%) Strand=Plus/Plus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70 |||||||||||||| ||||||||||||||||||| | | ||||||||||||||| | Sbjct 449 GTGGATGCCTTGGCACATACAGGCGATGAAGGACGTGGCACGCTGCGATAAGCTGCGGTG 508 Query 71 AG---TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACC---------CG 118 || ||||||| | || || ||||||||||||||||||||||||| || Sbjct 509 AGGTGTGAGCAACC----TTCGACCCGCAGATTTCCGAATGGGGAAACCCACTCTCACCG 564 Query 119 ----------GCCCTTTGG---------------GTCATT--------GCATGC------ 139 ||| | ||| || | | | || Sbjct 565 ATTAATCCTTGCCGTGTGGCGACACGCGGTACGGGTTAATCGGGGAGGGTATCACCGAAG 624 Query 140 TGAATACATAGGTATGCA-AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGA 198 ||||||||||| | || |||||||| ||| |||||||||||||| |||| ||| |||| Sbjct 625 TGAATACATAGCTTTGGTGAAGCGAACCCGGGGAACTGAAACATCTCAGTACCTGGAGGA 684 Query 199 AAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||||| ||||||||||||||| |||||||||||||||| Sbjct 685 AAAGACATCAACCGAGATTCCGTTAGTAGTGGCGAGCGAA 724 >seq4014 Length=1690 Score = 102 bits (112), Expect = 1e-19 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||| | | |||||||||||||||| ||| |||||||||| ||| Sbjct 912 GGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCTTGGG 853 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || ||| ||||||||| ||||||||||||||||||||| Sbjct 852 GAG-CTGCGAACGAGCTTTGATCCAGGGATTTCCGAATGGGGAAACCC 806 Score = 96.9 bits (106), Expect = 6e-18 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 136 ATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 || |||||| |||||| | |||||||| ||| ||||||||||||||||||| | | | Sbjct 730 ATCCTGAATCCATAGGGGTTTGAAGCGAACCCGGGGAACTGAAACATCTAAGTACCCGGA 671 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||||| || ||||| ||||| ||| |||||||||||||||| Sbjct 670 GGAAAGGACATCAA-CGAGACTCCGTCAGTAGTGGCGAGCGAA 629 >seq2465 Length=5135 Score = 80.6 bits (88), Expect = 5e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| |||||| |||||||||||||| || ||||| Sbjct 2683 GCGAACTGAAACATCTTAGTAGCTAAAGGAAAGGAAATCAACCGAGACCCCGTTAGTAGC 2742 Query 229 GGCGAGCGA 237 ||||||||| Sbjct 2743 GGCGAGCGA 2751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918319584896