Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1385 531 2e-148 seq7616 394 3e-107 seq4123 387 4e-105 seq2161 320 5e-85 seq257 104 8e-20 seq459 95.1 4e-17 >seq1385 Length=128055 Score = 531 bits (588), Expect = 2e-148 Identities = 445/543 (82%), Gaps = 17/543 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||| |||||||||||||| |||| | |||||||||| |||||||| Sbjct 31882 CTTCTGCTCCACATGAGATTTCTGTTCTTGTTGAGCTCATCTTAGGACACATGCGTTATC 31941 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC----------ATC 116 |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 31942 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCTGGATC 32001 Query 117 AACCCGGATCGGCCCGCGAA---GGACCTTAACGCCAGAAAATGGTCGGTGAAGACC-AG 172 ||||||| ||||||| || || ||||| | | ||| | || || | || | Sbjct 32002 GGCCCGGATTGGCCCGCAAAAGCGGGCCTTAGGTCTAAAAAGAGA--GGCGATGCCCCAC 32059 Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA 232 |||| |||| || |||||| || |||| ||| ||||||||||||| ||| || | Sbjct 32060 TTCCAATTCACAGAATAAGTATAATAACGTTAAAAGTAGTGGTATTTCTCTTTCGATGTT 32119 Query 233 ACGGC-TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAG 291 | | ||||| |||| ||||||||||||| |||||||||||| |||||| ||||||||| Sbjct 32120 GCCACCTCCCATTTATACTACACCTCTCAACTCATTTCACAAATTCGGACGAGAGTCAAG 32179 Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 ||||||||||| ||||||||||||| |||| ||||| ||||||| |||||||||||||| Sbjct 32180 CTCAACAGGGTTTTCTTTCCCCGCTAATTCTGCCAATACCGTTCCTTTGGCTGTGGTTTC 32239 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 ||| |||||||||||| ||||||| ||||||||||||| |||||||| ||||||||||| Sbjct 32240 GCTGGATAGTAGATAGCTACAGTGGAAATCTCGTTAATCTATTCATGCACGTCACTAATT 32299 Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 471 ||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 32300 TGATGACGAGACATTTGGCTACCTTAAGAGAGTCATAGTAACTCCCGCCATTTACCCGCT 32359 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||| ||||||||||||||||| | |||||||| | ||||||| |||||||| | Sbjct 32360 TTTGGTTGGATTTCTTCACTTTGACACTTAGAGCACTAGTTAGAAATCGCATTGCGTTAG 32419 Query 532 CAT 534 ||| Sbjct 32420 CAT 32422 >seq7616 Length=4459 Score = 394 bits (436), Expect = 3e-107 Identities = 443/551 (80%), Gaps = 49/551 (9%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| |||||||||||| || ||||| | ||||||| |||||||||| Sbjct 1403 CTTCTGTTCCACAAGAGATTTCTGTT-TCGATGAGCTCATCTTAGGAATCCTGCGTTATC 1461 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGG-AT 125 || | ||||||||| ||||||||||||||||||||||| ||||||| || ||||| || Sbjct 1462 TTTAACCAGATGTGC-GCCCCAGCCAAACTCCCCACCTG-CAATGTCTTCCGCCCGGTAT 1519 Query 126 CGGCCCGCGAAG---GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCC-GCTTC 181 ||||||| || | ||||| | | ||| || || | || |||| | ||| Sbjct 1520 CGGCCCGGCAAAAGCGGCCTTA--GTCTAAAAGAGGGCGATCC---CCGCTTCCAGATTC 1574 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGT-ATTTCACTTGCGCCGAAACGGCTCC 240 | || |||||||| || || ||| |||||||| ||||| ||| ||| | | ||||| Sbjct 1575 AC-GAATAAGTAAATAA-CGTTAAAAGTAGTGGTTATTTC-CTT-CGCTGTGCCAGCTCC 1630 Query 241 ------CACTTATTCTACACCTCTC-AAGTCATTTCACAAAGTCGGAC-TAGAGTCAAGC 292 ||||||| |||||| |||| || |||||| |||||||||| ||||||||||| Sbjct 1631 GTTCCCCACTTATACTACAC-TCTCGAACGTATTTCA-AAAGTCGGACATAGAGTCAAGC 1688 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 || ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1689 TCCACAGGGTCTTCTT-CCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGG-GTCG 1746 Query 353 CTAGATAGT-AGATAGGGACA-GTGGGAATCTCGTTAATC-CATTCAT--GCGCGTCACT 407 || |||||| ||| ||||||| |||||||| ||||||||| ||||||| |||||||||| Sbjct 1747 CTGGATAGTAAGACAGGGACATGTGGGAATTTCGTTAATCACATTCATTAGCGCGTCACT 1806 Query 408 AATTAGATG-ACGAG-GCATTT--GGCTACCTT--AAGAGA--GTCATA-GTTACTCCCG 458 ||||||||| ||||| |||||| ||||||||| | |||| |||||| |||||||| | Sbjct 1807 AATTAGATGAACGAGTGCATTTTGGGCTACCTTGAAGGAGATTGTCATAGGTTACTCCTG 1866 Query 459 CCGTTT-ACCCGCGCTTGGTTGA-ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 |||||| ||||||||| ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 1867 CCGTTTAACCCGCGCTGTGTTGATATTTCTTCACTTTGACA-TCAGAGCA-TGGGCAGAA 1924 Query 517 ATCACA-TTGC 526 |||||| |||| Sbjct 1925 ATCACAGTTGC 1935 >seq4123 Length=2705 Score = 387 bits (428), Expect = 4e-105 Identities = 401/521 (77%), Gaps = 12/521 (2%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 |||||||||| ||| ||||||| ||| |||| | ||||||||||||| ||||| ||| Sbjct 2562 TTTGCTCTACGAGAGGTTTCTGTCCTCTCTGAGCCTGCCTTAGGACACCTACGTTACGGT 2503 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGG 128 || | |||||| ||||||||| |||||||||| || |||| || || || ||||| Sbjct 2502 TTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACACGATCGTCGACGTGGATCAT 2443 Query 129 CCCGCGA--AGGACC------TTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTT 180 | | || |||| | |||||| || | || | ||| || Sbjct 2442 AAATTGTTCAAAACAATTTATTTAATACAAGAAAA--GTAA-TAAATTACGTCTCCATTT 2386 Query 181 CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-CGGCTC 239 || || |||||||| | |||| |||||||||||||| | || | || | ||| Sbjct 2385 AATCGACTAAGTAAAGCATCGATGTAAGTAGTGGTATTTCAAGTACGTAGCAAGCTACTC 2326 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||| ||| ||||||||| || | || ||||||| | | ||||||||||||||||||| Sbjct 2325 CCACCTATACTACACCTCACATGACACTTCACAATGCCTAGCTAGAGTCAAGCTCAACAG 2266 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| || Sbjct 2265 GGTCTTCTTTCCCCGCTGTTTCTGCCAAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATG 2206 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||||||||| |||||||||||||||||||| |||||||| | ||| |||| Sbjct 2205 GTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAGTTACCCGACG 2146 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| || Sbjct 2145 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCAATG 2086 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||| || | | ||||||| ||||||||||||||||| Sbjct 2085 GCTTTCACCATTATAACATTCATTGCACTGGGCAGAAATCA 2045 >seq2161 Length=60943 Score = 320 bits (354), Expect = 5e-85 Identities = 436/567 (77%), Gaps = 66/567 (12%) Strand=Plus/Minus Query 11 TGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGAC-ACCTGCGTTATGGTT 69 || || ||| |||||| |||||||| |||| | |||||||| ||||||||||| || Sbjct 29402 TGTTCCACACGAGATT-CTGTTCTCGTTGAGCTCATCTTAGGACCACCTGCGTTATCTTT 29344 Query 70 TAACAGATG--TGCCGCCCCAGCCAAACTCCCCACCTG-ACAATGTCATCAACC-CGGAT 125 ||||||||| ||||||||||||||||||||||||||| |||||||| || || ||||| Sbjct 29343 TAACAGATGGTTGCCGCCCCAGCCAAACTCCCCACCTGGACAATGTCTTCCGCCGCGGAT 29284 Query 126 CGGCCCGCGAA---GGACCTTAA-CGCCA-GAAAAT-GGTCGGTGAAGACCAGTTCCGCT 179 |||||||| || || ||||| | | | ||||| || || | | || ||||| | Sbjct 29283 CGGCCCGCAAAAGCGGGCCTTAGGCTCTACGAAAAGAGGGCGATTG-GCCCGCTTCCGAT 29225 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA--CGGC 237 ||| || ||||||||| | || ||| ||||||||||||||||| || | | || Sbjct 29224 TCACGGAATAAGTAAAATA-CGTTAAAAGTAGTGGTATTTCACTTTCGGCTGTTGCCAGC 29166 Query 238 T--CCCACTT-ATTC--TACACCTCTCA-AGTCATTT-CACAAAGTCGG-ACTAGAGTCA 289 | ||||||| ||| |||||| |||| ||||||| || |||||||| |||||||||| Sbjct 29165 TTCCCCACTTGATTACTTACACC-CTCATAGTCATTCACATAAAGTCGGGACTAGAGTCA 29107 Query 290 AGC--TCAACAGGG-TCTTCTTTCCCCGCTGATTCCGCC-AAGCCCGTTCCCTTGGCTGT 345 ||| ||||||||| |||||||||||||||||||| ||| |||||||||||| ||||| | Sbjct 29106 AGCCTTCAACAGGGGTCTTCTTTCCCCGCTGATTCTGCCAAAGCCCGTTCCC-TGGCTCT 29048 Query 346 G-GTTTCGC-----TAGATAGTAGA-TAGGG---AC-AGTGGGAATCTC-GTTAATCCAT 393 | ||||||| | ||||||||| |||| || || | ||||||| |||||||||| Sbjct 29047 GTGTTTCGCTGGGATGGATAGTAGACGAGGGGGTACAAGGGAGAATCTCGGTTAATCCAT 28988 Query 394 TC-----ATGCGCGTCACT---AATTAGATGACGA-GGCATTTGGCTACCTTAAGA-GAG 443 || ||||||||| || | | ||||||||| |||||||| ||||| ||| ||| Sbjct 28987 TCGGGTGATGCGCGTCGCTGAGATTAAGATGACGAGGGCATTTG--TACCTAGAGAGGAG 28930 Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA-- 501 ||||||||||||||| ||| ||||| || | |||||||||| | ||| Sbjct 28929 TCATAGTTACTCCCG--GTTACCCCGC-------TGGAATTCTTCACTTACAGTGTCAGT 28879 Query 502 GAGCACTGGGCAGAAATCACATTGCGT 528 ||||||| ||||||||||||||||||| Sbjct 28878 GAGCACT-GGCAGAAATCACATTGCGT 28853 >seq257 Length=326772 Score = 104 bits (114), Expect = 8e-20 Identities = 107/137 (78%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 73 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCG 132 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | Sbjct 83847 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATCGGCCAG 83906 Query 133 CGAA---GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCATTGATT 188 | || | |||||| | | ||| || || || | || | || || |||| || | Sbjct 83907 CAAAAGCGAGCCTTAAGTCTAAAAAGAGG--GGCGATGCCCCGCTTACGATTCACGGAAT 83964 Query 189 AAGTaaaaaaaCGATAA 205 |||||||| |||| ||| Sbjct 83965 AAGTAAAATAACGTTAA 83981 >seq459 Length=119508 Score = 95.1 bits (104), Expect = 4e-17 Identities = 152/197 (77%), Gaps = 30/197 (15%) Strand=Plus/Minus Query 367 GGGACAGTGGG--AATCT-CGTTAATCCATTCAT-----GCGCGTCA--CTAATTAGATG 416 |||||||| || ||||| ||||| |||||| |||| || ||||||||||| Sbjct 96614 GGGACAGTCGGCGAATCTTCGTTATATCATTCACCTCAGGCGCCTCCAGCTAATTAGATG 96555 Query 417 ACGAG-GCA-TTTGGC-TACCTT---AAGAGAGTCAT-AGT-TACTCCCGCCG-TTTA-C 466 ||||| ||| |||||| |||||| || |||||| | ||| ||||||||||| |||| | Sbjct 96554 ACGAGCGCATTTTGGCATACCTTAACAATAGAGTCCTGAGTCTACTCCCGCCGCTTTATC 96495 Query 467 CCGC-GCTTGGTT--GAATTT-CTTCACTTTGACATTCAG-AGCAC--TGGGCAGAAATC 519 ||| |||||||| |||||| ||| | ||||||||||| ||||| ||||||| |||| Sbjct 96494 GCGCTGCTTGGTTGCGAATTTCCTTACCATTGACATTCAGCAGCACTGTGGGCAG-AATC 96436 Query 520 ACA--TTGCGTCAACAT 534 ||| |||||| | ||| Sbjct 96435 ACAATTTGCGTTAGCAT 96419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635056821888