Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq4123 100 1e-18 seq1291 100 1e-18 seq105 87.8 6e-15 seq368 86.0 2e-14 seq821 78.8 3e-12 seq5 75.2 4e-11 >seq4123 Length=2705 Score = 100 bits (110), Expect = 1e-18 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 373 GACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 432 ||||| ||| |||||| |||||||||| ||||||| ||||||||| ||| |||| Sbjct 2196 GACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAGTTACCCGACGAGGCATTTG 2137 Query 433 GCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 ||||||||| || || |||||||| ||||||||||| | |||||||| Sbjct 2136 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCAAT 2087 >seq1291 Length=53376 Score = 100 bits (110), Expect = 1e-18 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAAC 413 |||||||| | || |||||||| || |||| |||| |||||||| || ||| || Sbjct 39027 TCACCGGGTCCATGTCGGAGACAGCGGGACAGTCATTACACCATTCGTACAAGTCACTAC 39086 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||| || || || ||||||||||||||| |||| |||||| ||||||||||| || Sbjct 39087 TTATGCGGAAAAAAAATTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGG 39146 Query 474 GGCTTCAATT 483 |||||| ||| Sbjct 39147 GGCTTCCATT 39156 Score = 82.4 bits (90), Expect = 3e-13 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAAC 413 |||||||| | || |||||||| || ||| | || |||||||| || ||| || Sbjct 39381 TCACCGGGTCCATGTCGGAGACAGCGGGACGGTCAT-ACACCATTCGTACAAGTCACTAC 39439 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||| || || || ||||||||||||||| |||| |||||| |||||||||| || Sbjct 39440 TTATGCGGAAAAAAAATTCGCTACCTTAGGACAGTTAGAGTTACTGACGCCGTTTACCGG 39499 Query 474 GGCTTCA 480 ||||||| Sbjct 39500 GGCTTCA 39506 >seq105 Length=516322 Score = 87.8 bits (96), Expect = 6e-15 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | | | || Sbjct 359281 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAACTCCC 359222 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 359221 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 359163 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | | |||||| || || || ||| |||||||||| || Sbjct 359162 AGAAACTGTCTACCTGAGAATGTCCCTTGGCCCGTAGGTCCTGGCACAAGGTTAGAATTC 359103 Query 178 CACTACGGTCAGAGTGGTATTTCA 201 | | ||||||||||| ||| Sbjct 359102 TAGCTCTTCCAGAGTGGTATCTCA 359079 >seq368 Length=184475 Score = 86.0 bits (94), Expect = 2e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 || ||||| ||| ||| ||||||||||||||||||||||||||||| || ||||||| Sbjct 1931 TCATTACGTTTTTCRTGCGGGTCGGAACTTACCCGACAAGGAATTTCGTTATCTTAGGAC 1872 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 || |||||| ||| ||||| | ||||||| Sbjct 1871 CATTTTAGTTATGACCTCCGTTCATCAGGGCTTC 1838 >seq821 Length=116645 Score = 78.8 bits (86), Expect = 3e-12 Identities = 141/204 (69%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| ||||||||||||||| ||| || ||||| | || || Sbjct 47443 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTCCTGCCTTTGCACTCGAGGGCCAATCTCC 47384 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| ||| |||| |||||||||||| |||||||||| | | ||||||| Sbjct 47383 GTCCGGCCCGAGGAAACGTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 47325 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | | |||||| || || || ||| |||||||||| || Sbjct 47324 AGAAACTGTCTACCTGAGAATGTCCCTTGGCCCGTAGGTCCTGGCACAAGGTTAGAATTC 47265 Query 178 CACTACGGTCAGAGTGGTATTTCA 201 | | |||||||| ||| ||| Sbjct 47264 TAGCTCTTTCAGAGTGATATATCA 47241 >seq5 Length=175836 Score = 75.2 bits (82), Expect = 4e-11 Identities = 67/83 (81%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||| || ||||||| ||||| Sbjct 11045 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTASGCMTTTCGTGCGGGTCG 11103 Query 410 GAACTTACCCGACAAGGAATTTC 432 ||||||||||||||||||||||| Sbjct 11104 GAACTTACCCGACAAGGAATTTC 11126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702250937856