Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3376 821 0.0 seq1086 556 4e-156 seq73 495 1e-137 seq1385 352 9e-95 seq70 342 2e-91 seq564 266 1e-68 seq191 109 2e-21 seq4795 91.5 4e-16 seq48 91.5 4e-16 seq200 77.0 1e-11 >seq3376 Length=3804 Score = 821 bits (910), Expect = 0.0 Identities = 488/507 (96%), Gaps = 6/507 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1145 GTACTCATTCCAATTACAAGACTCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 1204 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1205 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 1264 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTT---GATACCATG 177 ||||||||||| |||||||||| |||||||||||||||||||||||| | | | | Sbjct 1265 TCTCAGGCTCCTTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTGCCCGTTG--AAG 1322 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1323 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 1382 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTT 297 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 1383 GCACAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAGGGAGCCCCGAAGGGCATT 1442 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTC 357 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1443 GGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGAGGTTTTTAGCATGTATTAGCTC 1502 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1503 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 1562 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1563 TGAGCCATTCGCAGTTTCACAGTATAG-TTGCTTATACTTAGACATGCATGGCTTAATCT 1621 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 1622 TTGAGACAAGCATATGACTACTGGCAG 1648 >seq1086 Length=77272 Score = 556 bits (616), Expect = 4e-156 Identities = 427/496 (86%), Gaps = 14/496 (3%) Strand=Plus/Minus Query 19 AGACCCAAAAGAGCCCTGTATCAGT-ATTTATTGTCACTACCTCCCCGTGTCGGGATTGG 77 |||| |||| |||| |||| | |||||||||||||||||||||||||| ||||||| Sbjct 68788 AGACTCAAAGAGGCCCGGTATTGCTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGG 68729 Query 78 GTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68728 GTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 68669 Query 138 GGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCAT 197 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 68668 GGAATCGAACCCTAATTCTCCGTTACCCGTCACCACCATGGTAGGCCACTATCCTACCAT 68609 Query 198 CGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTC 256 |||||||||||||||||||||||||||||| ||| | || | ||||| || |||| Sbjct 68608 CGAAAGTTGATAGGGCAGAAATTTGAATGATGTGTCGTCAGCACGAAGGCTATACGATCT 68549 Query 257 GTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GGCGTTGGTTTTTTATCTA 310 || |||||| |||||||| || |||| || ||| |||| | ||||||||| Sbjct 68548 GTCGAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCGCGTCGACCTTTTATCTA 68491 Query 311 ATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCAC 369 |||||| | ||||||| |||||| |||||| | ||| ||||||||||||||||||| || Sbjct 68490 ATAAATGCGTCCCTTCCAGAAGTC-GGGTTTGTTGCACGTATTAGCTCTAGAATTACTAC 68432 Query 370 GGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 |||||||| ||||| |||||| |||||| |||| ||||||||||||||||||||||||| Sbjct 68431 GGTTATCCGAGTAGT-AGGTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGC 68373 Query 430 AGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 |||||||| || | ||| | | ||||||| ||||||||||||||||||||||||||||| Sbjct 68372 AGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGC 68313 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 68312 ATATGACTACTGGCAG 68297 >seq73 Length=736034 Score = 495 bits (548), Expect = 1e-137 Identities = 423/512 (83%), Gaps = 14/512 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| ||| ||| |||| ||||||||| Sbjct 621148 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGATATTGCTATATATTATCACTACCT 621206 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | ||||||| |||||||||||||| | ||||||| |||| |||||||||||||||| || Sbjct 621207 CGCCGTGTCAGGATTGGGTAATTTACATGCCTGCTTCCTTTCTTGGATGTGGTAGCCATT 621266 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||| || |||||||| | ||||||| | ||||||||| Sbjct 621267 TCTCAGGCTCCCTCTCCGGAATCAAAACCTAATTCTCTGTTACCCATCACCACCATGGTA 621326 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||||||||||||| | || | || Sbjct 621327 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG-ATGGGCGTCAGCA 621385 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 | ||||| || |||| || ||||||| |||||||| || |||| || ||| | Sbjct 621386 CGAAGGCTATACGATCTGTCAAGTTATAATGAATCATCA--GAGCAACGGGCAAAGCCTG 621443 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATG-TATT 352 ||| | ||||||||||||||| |||| | ||||||||||||| | ||| | || | Sbjct 621444 CGTCGACCTTTTATCTAATAAATGTGTCCCTCCAGAAGTCGGGGTTTGTTGCACGTTAAT 621503 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 || ||||||||||| | |||||||| ||||| |||||| |||||| |||| |||||||| Sbjct 621504 AGTTCTAGAATTACTATGGTTATCCGAGTAGT-AGGTACCATCAAACAAACTATAACTGA 621562 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| | |||||||||| Sbjct 621563 TTTAATGAGCCATTCGCAGTTTCACAGTTTGAATTAGTTCATACTTACATATGCATGGCT 621622 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||| ||||| |||||||||| Sbjct 621623 TAATCTTTGAGACAAACATATAACTACTGGCA 621654 >seq1385 Length=128055 Score = 352 bits (390), Expect = 9e-95 Identities = 310/379 (82%), Gaps = 7/379 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| ||| | |||| |||||||||||||| ||| Sbjct 37537 GTACTCATTCCAATTACCAGACTCAAA-GAGATCGGTATTGCTATTTATTGTCACTGCCT 37595 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| | ||||||||| |||| ||| |||||||||||||||| |||||||||||| Sbjct 37596 CCCCGTGTCAGAATTGGGTAACTTGCACGCATGCTGCCTTCCTTGGACGTGGTAGCCGTT 37655 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||| |||||||||||| ||||| ||||||||||| | ||||||||| ||||||||| Sbjct 37656 TCTCTGGCTCCCTCTCCAGAATCCAACCCTAATTCTCTGTTACCCGTCATCACCATGGTA 37715 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||| |||||||||||||||||||||||||||| ||||| | || Sbjct 37716 GGCCACTATCCTACCATTAAAAGTTGATAGGGCAGAAATTTGAATGATGCATCGTCAGCA 37775 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGG-AGCCCCGAAG--GGCG 295 | |||| | |||| || |||||| ||||||||||| ||| | | ||| ||| Sbjct 37776 CGAAGGTTGTACGATCTGTCGAGTTATCATGAATCACCAGAGGAAAGGGCAAAGCTCGCG 37835 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 | | ||||||||||||||| | ||||||| |||||| || ||| | ||| ||||||| Sbjct 37836 TCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCAGGATTTGTTGCACGTATTAG 37895 Query 355 CTCTAGAATTACCACGGTT 373 |||||||||| | |||| Sbjct 37896 TTCTAGAATTAATATGGTT 37914 Score = 140 bits (154), Expect = 1e-30 Identities = 118/143 (83%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 363 TTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422 |||| | ||||||||| |||||| ||||| |||||| |||| |||||| |||| ||||| Sbjct 38601 TTACAATGGTTATCCAAGTAGTA-GGTACCATCAAACAAACTATAACTTATTTCATGAGT 38659 Query 423 CATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGA 481 |||||| |||||||| | | ||| || ||||||| ||||| ||| |||||||||||| Sbjct 38660 CATTCGAAGTTTCACAATMTGAATTAGTTCATACTTACACATGTATGTCTTAATCTTTGA 38719 Query 482 GACAAGCATATGACTACTGGCAG 504 ||||| |||||||| ||||| || Sbjct 38720 GACAAACATATGACAACTGGAAG 38742 >seq70 Length=498087 Score = 342 bits (378), Expect = 2e-91 Identities = 284/342 (83%), Gaps = 10/342 (3%) Strand=Plus/Minus Query 27 AAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGC 86 |||||||| |||| |||||||||||||||||||||| |||| | ||||| |||||||| Sbjct 30334 AAGAGCCCGGTATTGCTATTTATTGTCACTACCTCCCCATGTCAGAATTGGATAATTTGC 30275 Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 146 ||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 30274 ACGCCTACTGTCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCACTCTCCGGAATCGAA 30215 Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 || |||||| |||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 30214 CCTTAATTCTTCGTTACCCGTCAACACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 30155 Query 207 ATAGGGCAGAAATTTGAATGAACCATCGCCGGC-TCAAGGCCATGCGATTCGTTAAGTTA 265 ||||| ||||||||||||||| | ||| | || ||||| || |||| || || ||| Sbjct 30154 ATAGGACAGAAATTTGAATGATGCGTCGTCAGCARGAAGGCTATACGATCTGTCAAATTA 30095 Query 266 TTATGAATCACCAAGGAGCCCCG----AAG--GGCGTTGGTTTTTTATCTAATAAATACA 319 | |||||||| || |||| || ||| |||| | |||||||||||||||| | Sbjct 30094 TCATGAATCATCA--GAGCAACGGGCAAAGCCCGCGTCGACTTTTTATCTAATAAATGCG 30037 Query 320 CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||| ||||||||||||| | ||| |||||| |||||| Sbjct 30036 TCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAACTCTAG 29995 >seq564 Length=137965 Score = 266 bits (294), Expect = 1e-68 Identities = 318/408 (78%), Gaps = 34/408 (8%) Strand=Plus/Minus Query 126 GGCTCCCTCTCCGGAAT-CGAACCCTAATTCCCCGTTACC--CGTTGATA-CCATGGTAG 181 |||||||||||| | || ||||||||||||| |||||||| ||| | ||||||||| Sbjct 131843 GGCTCCCTCTCCCGGATGCGAACCCTAATTCTCCGTTACCACCGTCACCAACCATGGTAG 131784 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC-GGCT 240 ||||||||||||||||||||||||||| ||||||||||||||| ||| | ||| Sbjct 131783 GCCACTATCCTACCATCGAAAGTTGATTA--CAGAAATTTGAATGATGTGTCGTCAGGCA 131726 Query 241 C-AAGGCCATGCGATTC---GTTAAGTTATTATGAATCACC--------AAGGAGCCCCG 288 | ||||| || || || || |||||| ||||||| | ||| || || Sbjct 131725 CGAAGGCTATACGGATCTCTGTCGAGTTATC-TGAATCATCCAGAGGGCAAGCGGCGCCA 131667 Query 289 AAG---GGCGTTGGTTTT-TTATC-TAATAAATACACCCCTTCC-GAAGTCGGGGTTT-T 341 ||| | ||| | || ||||| |||||||| | ||||||| ||||||||||||| | Sbjct 131666 AAGCCCGCCGTCGACCTTCTTATCATAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGT 131607 Query 342 TAGCATGTATTAGCTCTAGAATTACC-ACGGTTATCCATGTAGTAAGGTACT-ATCAAAT 399 | ||| ||||||||||||||||||| |||||||||| |||||| ||||| |||||| Sbjct 131606 TGGCACGTATTAGCTCTAGAATTACTGACGGTTATCCGAGTAGTA-GGTACGCATCAAAC 131548 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTC-ACTGTATAGATTGCTTATACTTA 458 |||| ||||||||||||||||||||||||||||||| || || | ||| || |||||| Sbjct 131547 AAACTATAACTGATTTAATGAGCCATTCGCAGTTTCGACAGTCTGAATTAGTTCTACTTA 131488 Query 459 GA-CAT-GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||| |||||||||||||||||||| | ||||||| ||||||| Sbjct 131487 CACCATGGCATGGCTTAATCTTTGAGAGCA-CATATGATAGCTGGCAG 131441 >seq191 Length=502516 Score = 109 bits (120), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 10/205 (5%) Strand=Plus/Plus Query 301 TTTTTATCTAATAAATACACCCCTTCCGA--AGTCGGGGTTTTTAGCATGTATTAGCTCT 358 |||||||||||||||| | ||| | | |||| | ||| | ||||||||| | ||| Sbjct 370365 TTTTTATCTAATAAATTTGTCACTTTCTATAAGTCAGACTTTGTTGCATGTATTGGATCT 370424 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 | || ||||||| |||| | | || |||||| |||| | || | ||||||| Sbjct 370425 ATTAT------GGTTATCTGAGTAGCATG-TATCATCAAACAAACAACAATTTATTTAAT 370477 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCT 477 ||| |||||| ||| | || | ||| || ||| ||| |||||||| |||||| | Sbjct 370478 GAGTCATTCGTGATTTGATAGTGTGAATTAATTTATATTTAAACATGCATAACTTAATAT 370537 Query 478 TTGAGACAAGCATATGACTACTGGC 502 ||||||||||||||| ||||||||| Sbjct 370538 TTGAGACAAGCATATAACTACTGGC 370562 >seq4795 Length=1473 Score = 91.5 bits (100), Expect = 4e-16 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1442 ATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1390 >seq48 Length=565888 Score = 91.5 bits (100), Expect = 4e-16 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 51 GTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 ||||||||||||||||||| | |||||||| ||| ||||||||||||||||||| ||||| Sbjct 331902 GTCACTACCTCCCCGTGTCAGAATTGGGTACTTTACGCGCCTGCTGCCTTCCTT-GATGT 331960 Query 111 GGTAG 115 ||||| Sbjct 331961 GGTAG 331965 >seq200 Length=199389 Score = 77.0 bits (84), Expect = 1e-11 Identities = 111/146 (76%), Gaps = 22/146 (15%) Strand=Plus/Plus Query 42 GTATTTATTGTCACTACCT-----CCCCGTGT-CGGGATTGGGTAATTTGCGCGC--CTG 93 ||||||||| |||||||| ||||| || | |||| |||||||| |||| | | | Sbjct 84281 GTATTTATT-TCACTACCCGCATCCCCCGGGTTCAGGAT-GGGTAATTGGCGCCCTGCGG 84338 Query 94 CTGCCTTC---CTTG--GATGTGGTAGCCGTTTCT--CAGG-CTCCC--TCTCCGGAATC 143 ||||| | |||| |||| |||| |||||| |||| ||||| |||||| |||| Sbjct 84339 CTGCCCTTGCGCTTGTGGATGGGGTA--CGTTTCCTCCAGGGCTCCCGTTCTCCGTAATC 84396 Query 144 GAACCCTAATTCCCCGTTACCCGTTG 169 |||||||||||| |||||||||| || Sbjct 84397 GAACCCTAATTCTCCGTTACCCGGTG 84422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510267749376