Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq194 199 4e-46 seq471 141 1e-28 seq60 118 1e-21 >seq194 Length=269275 Score = 199 bits (220), Expect = 4e-46 Identities = 245/332 (74%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 161989 TTTGGGGTTGCC-GCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGAC 162047 ||||| || || ||||| || | ||| | || || | ||||| || || |||||||| Sbjct 236917 TTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 236976 Query 162048 GCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGC 162107 | | || || || || |||||||| || || ||| | || || | |||||||| | ||| Sbjct 236977 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGC 237036 Query 162108 TATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTT 162167 |||||| |||| ||||| ||||| || | | |||||||||| |||||||| || Sbjct 237037 TATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 237096 Query 162168 CAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTT 162227 | |||||| || | || |||| || || ||||| || |||||||| || ||||| || Sbjct 237097 CCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTT 237156 Query 162228 CTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCT 162287 ||||| || ||||| || |||||||| |||||| |||||||| |||||||||||| | Sbjct 237157 TTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 237216 Query 162288 CTTCGTTCCCGTCATGGGTCTCTGGACAAGTT 162319 || || || || | ||| | |||| ||||| Sbjct 237217 ATTTGTACCAGTAACCGGTTTATGGA-AAGTT 237247 Score = 113 bits (124), Expect = 5e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 161794 GGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTT 161853 || || || |||| |||||| || |||||||| ||||| | || || || |||||| | Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975 Query 161854 CGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTC 161912 ||||| |||||||||||||| ||| || | | |||||||| ||||| ||| | ||||| Sbjct 237974 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TACGTCCTTATAATGCAATTACATTCTC 237916 Query 161913 TGGTCCTATTGCTGTTTTTGT 161933 ||| || |||||| ||||||| Sbjct 237915 TGGCCCAATTGCTATTTTTGT 237895 >seq471 Length=100806 Score = 141 bits (156), Expect = 1e-28 Identities = 203/279 (73%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 161644 TGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAATTTTCTTACAGCGGC 161702 ||||||| |||||| | || ||||||||| | | ||| ||||| |||| | || || || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTT-TAACGGCTGC 70242 Query 161703 AGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGG 161761 |||| | || ||| | | | | |||||| || || || |||||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCT-TTGTTGTTACTCTGGGGTCCTAAAG 70301 Query 161762 CTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCC 161821 | ||||| ||||| | ||| ||| | || || || |||| |||||| || |||| Sbjct 70302 CACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCC 70361 Query 161822 ACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCGTCTTATCG 161881 |||| ||||||| || || || |||||| | |||| |||||||||||||| | | Sbjct 70362 ACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCG--ATCTGT 70419 Query 161882 GTA--TCCGTCCTTACAATGCTATTGCTTTCTCTGGTCC 161918 ||| | |||||||| ||||| ||||| |||||||| || Sbjct 70420 GTAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq60 Length=520799 Score = 118 bits (130), Expect = 1e-21 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 162334 GGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAG 162393 || || |||| || | |||||||| ||||| || | |||| | ||||||||||| || Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 162394 GATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCA 162453 |||||||||||||| || ||||||||||| ||||| ||||| || || ||| ||||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 162454 TGG 162456 ||| Sbjct 267456 TGG 267454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551315651896800