Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq194 199 5e-46 seq60 95.1 2e-14 seq116 84.2 3e-11 >seq194 Length=269275 Score = 199 bits (220), Expect = 5e-46 Identities = 241/327 (74%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 190460 CTTCGGTGTGGCA-GCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGA 190518 ||| ||||| ||| || || || || ||| ||||||| || || || || ||||| |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 190519 CGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAG 190578 || ||||||| || || |||||||| ||||| ||| | | || | || | || | | Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 190579 CAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGT 190638 | || ||||||| ||||| || |||||||| | |||||||||||| ||||| || | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 190639 TTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTT 190698 | || || || | || |||| ||||| || ||||| ||||| || || ||||| | Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 190699 TCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGC 190758 | ||||| ||||||||||| ||||| || |||||| | ||||| |||||||||||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 190759 TCTTTGTTCCTGTTATGGGTCTGTGGA 190785 | ||||| || || | ||| | |||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242 >seq60 Length=520799 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 190806 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAA 190865 || || |||| ||| | |||||||||||||| || | || | || | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 190866 GATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCA 190925 ||||| || || |||||||| ||||| |||||||| || || || || ||| ||||| | Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 190926 TGG 190928 ||| Sbjct 267456 TGG 267454 >seq116 Length=395782 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/174 (72%), Gaps = 10/174 (6%) Strand=Plus/Plus Query 189064 GCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTC----GATGAGTGGCT 189119 || |||||| | ||||| ||||| || |||||||| | || || ||||| ||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 189120 CTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT- 189178 |||| |||||||||| |||| | || | |||||| | | || | || || | Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTG 22855 Query 189179 --ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGAT 189230 |||||||||||||||||||||| || |||| | ||||||| |||||||| Sbjct 22856 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGAT 22909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634010599944000