Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq194 208 9e-49 seq407 98.7 1e-15 seq116 96.9 4e-15 seq60 95.1 1e-14 >seq194 Length=269275 Score = 208 bits (230), Expect = 9e-49 Identities = 247/332 (74%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 164361 TTTGGGGTCGCG-GCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGAC 164419 ||||| || || || || || ||||| || | || | ||||| || ||||| ||||| Sbjct 236917 TTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 236976 Query 164420 ACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGC 164479 | ||||| || ||||||||||| ||||| || | | || | ||| | || ||||| Sbjct 236977 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGC 237036 Query 164480 TATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTT 164539 ||||||||||||||| || || |||||||| |||||||||||||| ||||||| || Sbjct 237037 TATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 237096 Query 164540 CAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTT 164599 | || || | || ||||||| ||||| ||||| || ||||| || || |||||||| Sbjct 237097 CCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTT 237156 Query 164600 CTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCT 164659 ||||| || || ||||| ||||||| ||||| |||||||| || ||||||||| | Sbjct 237157 TTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 237216 Query 164660 CTTTGTTCCTGTCATGGGACTTTGGACAAGTT 164691 ||||| || || | || | |||| ||||| Sbjct 237217 ATTTGTACCAGTAACCGGTTTATGGA-AAGTT 237247 >seq407 Length=272206 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 164386 TCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTG 164445 ||||||| || | |||| || ||||| ||||| | || | || ||||||||||| | Sbjct 61904 TCCTCTTTTTTC---AAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAG 61960 Query 164446 TTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATA 164505 |||| || | | || | ||| | |||||||||||| ||||||||| | || |||| Sbjct 61961 TTGCCGGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATA 62020 Query 164506 CTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAG 164562 |||| |||||||||||||| ||||||| ||| || || | || |||| || Sbjct 62021 CTTTATTTGAAGATGGTGATGGTACAAATACATTCCGTGCTTTTAACCCKACTCGAG 62077 >seq116 Length=395782 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/183 (73%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATC--TC--TTGATGAATGGCT 160840 || |||||| | ||||| ||||| || ||||||||| | || || ||||||||||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 160841 CTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTA 160900 ||||||||||||||| |||| | || | |||||| | | || | || || Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 160901 CATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTG 160959 ||||||||| |||||||||||| | ||| | || |||| || ||||| ||| |||| Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGAT-TGCTGTTG 22917 Query 160960 CAT 160962 ||| Sbjct 22918 CAT 22920 >seq60 Length=520799 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 164682 TGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTG 164741 |||| ||| || |||| | |||| || || | || | ||||||||||| || || Sbjct 267600 TGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTT 267541 Query 164742 TCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATC 164801 | |||| | ||| | |||||||| ||||||||||||||||| ||||| || || || || Sbjct 267540 TMTCAGRAAATTCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATT 267481 Query 164802 CTCCTCAATGAAGGACTCCGTGCCTGGA 164829 ||| | || || || | ||||| |||| Sbjct 267480 CTCTTAAACGAGGGTATTCGTGCTTGGA 267453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559266781550400