Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1275 379 3e-103 seq4383 327 2e-87 seq627 302 7e-80 seq385 188 1e-45 seq6171 152 8e-35 seq3685 152 8e-35 seq1261 100 4e-19 seq774 93.3 6e-17 >seq1275 Length=234140 Score = 379 bits (420), Expect = 3e-103 Identities = 240/256 (94%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | Sbjct 166052 GTACAAAGGGCAGGGATGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 166109 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166110 CTCATTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 166169 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 166170 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCATTGTAGCGCGCGTGCGG 166229 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| | Sbjct 166230 CCCAGAACATCTAAGAGCATCACAGACCTGTTATTGCCTCACACTTCCTTGGCCTAAGCG 166289 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 166290 GCCATAGTCCCTCTAA 166305 >seq4383 Length=29509 Score = 327 bits (362), Expect = 2e-87 Identities = 222/245 (91%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 || ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| | Sbjct 3709 GTGCAAGGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTTCTAGGAATT-C 3652 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 3651 CTCCTTAAAGACCAACAATTGCAATGATCTATCCCCATCATGATGAAATTTCAAAGATTA 3592 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | | |||||||||||| ||||| || ||||||||||||||||||| |||||||| Sbjct 3591 CCCCGGC-TGTCGGCCAAGGCTATAGATTCATTGAATACATCAGTGTAGCATGCGTGCGG 3533 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 || ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| | Sbjct 3532 CCTAGAACATCTAAGGGCATCATAGACCTGTTATTGCCTCCAACTTCCTTGGCCTAAGCG 3473 Query 241 GCCAT 245 ||||| Sbjct 3472 GCCAT 3468 >seq627 Length=319257 Score = 302 bits (334), Expect = 7e-80 Identities = 201/221 (91%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | Sbjct 61488 GTACAAAGGGCAGGGACATAGTCAACGCGAG-TTGATGACTCGCGCTTACTAGGAATT-C 61545 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| Sbjct 61546 CTCGTTGAAGACCAACAATTACAATGATTTATCCCCATCACAATGAAATTTCAAAGATTA 61605 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| ||| ||||| || | ||||||| |||||||||||||||||| ||| |||||| Sbjct 61606 CCCAAGCCTATCGGCTAAAGCTATAGACTTGTTGAATACATCAGTGTACAGCGTGTGCGG 61665 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 |||||||||||||||| |||||||||| ||||||||||||| Sbjct 61666 CCCAGAACATCTAAGGACATCACAGACTTGTTATTGCCTCA 61706 >seq385 Length=726794 Score = 188 bits (208), Expect = 1e-45 Identities = 141/164 (86%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93 |||||||| ||| ||| |||||||| |||| ||||||||||||||||||||||||||||| Sbjct 721227 TGATGACTAGCGTTTAATAGGAATT-CCTCATTGAAGACCAACAATTGCAATGATCTATC 721169 Query 94 CCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTT 153 | |||||||||||||||||||||||||| | || |||||||| | ||||||||||| Sbjct 721168 CTAATCACGATGAAATTTCAAAGATTACCTAGGGCTATCGGCCAATGCTATAGACTCGTT 721109 Query 154 GAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGG 197 |||||||||||||||||| | || | || || |||||||||| Sbjct 721108 CAATACATCAGTGTAGCGCACATGTGTCCTAGGGCATCTAAGGG 721065 >seq6171 Length=4904 Score = 152 bits (168), Expect = 8e-35 Identities = 111/129 (86%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 88 TCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGA 147 ||||||||||||| |||||||||||||||||| || | | ||| |||||||| ||||| Sbjct 4428 TCTATCCCCATCATAATGAAATTTCAAAGATTAACCTGGCATGTAGGCCAAGGCTATAGA 4369 Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 ||||||||||||||||||||||| | |||| || ||||||||||||||||| ||| || Sbjct 4368 CTCGTTGAATACATCAGTGTAGCACATGTGCAGCTCAGAACATCTAAGGGCACCACGTAC 4309 Query 208 CTGTTATTG 216 || |||||| Sbjct 4308 CTTTTATTG 4300 >seq3685 Length=50081 Score = 152 bits (168), Expect = 8e-35 Identities = 111/129 (86%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 88 TCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGA 147 ||||||||||||| |||||||||||||||||| || | | ||| |||||||| ||||| Sbjct 21169 TCTATCCCCATCATAATGAAATTTCAAAGATTAACCTGGCATGTAGGCCAAGGCTATAGA 21228 Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 ||||||||||||||||||||||| | |||| || ||||||||||||||||| ||| || Sbjct 21229 CTCGTTGAATACATCAGTGTAGCACATGTGCAGCTCAGAACATCTAAGGGCACCACGTAC 21288 Query 208 CTGTTATTG 216 || |||||| Sbjct 21289 CTTTTATTG 21297 >seq1261 Length=173293 Score = 100 bits (110), Expect = 4e-19 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 173 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGG 232 |||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||| Sbjct 42377 GCGTGCGGCCCAGAACATTTAAGGGCATCACTGACCTATTATTGCCTCAAACTTCCTTGG 42318 Query 233 CCTAAAAGGCCAT 245 |||| |||||| Sbjct 42317 TCTAAGCGGCCAT 42305 >seq774 Length=164961 Score = 93.3 bits (102), Expect = 6e-17 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 35 GATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCC 94 ||||||| || ||||||||||||| ||| ||| ||||| ||||||||||||||| ||||| Sbjct 128116 GATGACTTGCACTTACTAGGAATT-CCTTGTTAAAGACTAACAATTGCAATGATTTATCC 128058 Query 95 CCATCACGATGAAATTTC 112 || ||| |||||| |||| Sbjct 128057 CCGTCATGATGAACTTTC 128040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751926071820