Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1275 221 2e-55 seq735 210 4e-52 seq93 203 6e-50 seq4383 131 3e-28 seq1261 109 1e-21 seq367 109 1e-21 >seq1275 Length=234140 Score = 221 bits (244), Expect = 2e-55 Identities = 200/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 166944 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 166885 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | ||| || | |||| ||||| |||||| | ||| || |||||||| Sbjct 166884 GGGATAACATCATAAGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGAAGTAATGAT 166826 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | ||||||| | ||||| || ||||||||||||||||| |||||||| Sbjct 166825 TAACAGGGACACTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTCGGATTTAT 166766 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || ||||||||||||||||||| || |||||||| Sbjct 166765 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAAACA-AGAACGAAA 166707 Query 311 GTTAGGGG 318 ||| |||| Sbjct 166706 GTTGGGGG 166699 >seq735 Length=461690 Score = 210 bits (232), Expect = 4e-52 Identities = 187/230 (81%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| ||||| | |||||||||||| Sbjct 19497 CTATTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTAGATACATTAGCAT 19556 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 ||||||| | |||||| | ||||| |||| | |||| | ||| || |||||||| Sbjct 19557 GGAATAACATCATAGGATTT-CGGTTTTATTCTATTGGCCTTCGGGATCGAAGTAATGAT 19615 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| |||||||||||||| ||| |||| || |||| ||||||||||||| |||||| Sbjct 19616 TAACAGGGATAGTCGGGGCGTTCA-TATTTCATAGTCAAAGGTGAAATTCTTAAATTTAT 19674 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| || | ||||||||| || ||||||||||||||||||||||| Sbjct 19675 GAAAGACGAAGAATTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA 19724 >seq93 Length=380271 Score = 203 bits (224), Expect = 6e-50 Identities = 196/248 (79%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || || ||||||| |||||||| | |||||||| |||| |||| |||||||||||||| Sbjct 287363 CTATTGCTTTGAAGAAATTAGAAGGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 287422 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| |||||| | ||| || ||||| || Sbjct 287423 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGAAGTAATAAT 287481 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||| | ||| ||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 287482 TAACAGGTACAGTTGGGGGCATTCGTATTTCATTGTCATAGGTGAAATTCTTGGATTTAT 287541 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| | ||||||||| || |||| ||||||||||||||||| |||| ||| Sbjct 287542 GAAAGACGAACAATTGCGAAAGCTTTTGCCAATGATGTTTTCATTAATCA-AGAACAAAA 287600 Query 311 GTTAGGGG 318 ||| |||| Sbjct 287601 GTTGGGGG 287608 >seq4383 Length=29509 Score = 131 bits (144), Expect = 3e-28 Identities = 133/168 (79%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| |||||||||| ||||||||||||| |||| | |||||||||||| Sbjct 2851 CTATTACTTTGAAGAAATTAGAGTACTCAAAGCAGGCCTACGCTCTGGATACATTAGCAT 2910 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT-TTCTAGGACCGCCGTAATGA 189 || |||| | |||||| | |||| ||| | | |||| ||| || | | ||||||| Sbjct 2911 GGGATAACATCATAGGATTT-CGGTCCTAATCTATTGGCCTTCGAGATCAGA-GTAATGA 2968 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 |||| ||||||||||||||| | ||||| || ||||||||||||| Sbjct 2969 TTAACAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 3016 >seq1261 Length=173293 Score = 109 bits (120), Expect = 1e-21 Identities = 98/122 (80%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 197 GGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGA 256 ||| | || |||| | ||||| || |||| ||||||||||||||||||||| |||| Sbjct 42162 GGACAATCAGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTATCAAAGA 42221 Query 257 CTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGG 316 | ||| |||| |||||| || |||| ||||||||||||||||| ||||||||| | || Sbjct 42222 CGAACAACTGTGAAAGCATTTGCCAATGATGTTTTCATTAATCA-AGAACGAAAGGTGGG 42280 Query 317 GG 318 || Sbjct 42281 GG 42282 >seq367 Length=164953 Score = 109 bits (120), Expect = 1e-21 Identities = 156/216 (72%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || ||||||| || ||| ||||||| || ||||| || | ||| | |||||||||||| Sbjct 154834 CTGTTACTTTAAAGAAAATAGAGTGCTCCAAGCAAGCTTACGCTTTGGATACATTAGCAT 154775 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | |||| | |||| | | ||| | |||||||| Sbjct 154774 GGGATAACATCATAGGATTT-CGCTCTTATTCTATTGGACTTTGGGATCAGAGTAATGAT 154716 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTC----AATTGTCAGAGGTGAAATTCTTGGAT 246 ||| ||||||||| |||| | ||||| ||| | | |||||||||||||||| Sbjct 154715 TAACAGGGATAGTTGGGGACATTCGTATTTCTTAAATAG---GGGGTGAAATTCTTGGAT 154659 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAA 282 |||| ||| | ||| | || |||||| || |||| Sbjct 154658 TTATGAAAGGCGAACAATTGTGAAAGCATTTGCCAA 154623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915107125504