Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq958 196 2e-47 seq708 179 2e-42 seq5693 150 7e-34 seq4383 145 3e-32 seq3685 107 8e-21 seq511 84.2 9e-14 >seq958 Length=216197 Score = 196 bits (216), Expect = 2e-47 Identities = 216/282 (77%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 406 GGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAA 464 ||||||||||| ||||||||||||||||||| |||| | ||||||| || | | || Sbjct 119043 GGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACCGGCGATTAA 118984 Query 465 ACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCGA 521 |||||| | | ||| ||| ||| | || || ||| | |||||| |||| || Sbjct 118983 ACCCGTAAGGCATAAGGAAGCTGACTAG---TGAGATCCCTTTGAGGGTTGCACTGCTGA 118927 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | || || || || | || ||||||| || | || ||||||||||| Sbjct 118926 CCGACCATGATCTTTTAAGAAGGGTTCGTGTGAGAGCATGCCTATCGGTACCCGAAAGAT 118867 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 ||||||||||||| || ||||||||||||||||||||||||||||||||| | | | Sbjct 118866 GGTGAACTATGCCCGAGCGCGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTGGAGAT 118807 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| | ||| | |||||||||||||||| Sbjct 118806 ACTGACGTGCAAATCGTTTGTCTGACTTGGGTATAGGGGCGA 118765 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| |||| ||| |||||||| || | ||||||| Sbjct 119433 GAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGGGCGGTAAATTCTGTCCATGGCTAAAT 119374 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || || | ||||||| ||||||| | || |||||||||||| |||||| || Sbjct 119373 CTCGGTGAGTGGTCGATAGCAAACAAGTACTGGGAGGGAAAGATGAAAAAGACTTTGAAA 119314 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||| ||| || || | ||||||| | ||||||||| Sbjct 119313 AGCAAGTCAAAGAGTACTTCAAATTGTCGGGAGGGAAGCG 119274 >seq708 Length=137701 Score = 179 bits (198), Expect = 2e-42 Identities = 212/280 (76%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTT-TGGGTGTCAAAC 466 ||||||||| |||| |||||||||||||| |||| | || |||| ||| | | || Sbjct 31627 CCCGTCTTGAAACATGGACCAAGGAGTCTGACATGTGTGTGAGTCAACTGGCAATTACAC 31686 Query 467 CCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGA--GGGTGCACCATCGACC 523 || | | | ||| ||| ||| || | |||||| ||| | | || ||||| |||| Sbjct 31687 CCATAAGGCATAAGGAA-GTGGACTG--GTGGGATCCCTTTAACGGTTGCACTGCTGACC 31743 Query 524 GATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 || | |||| | || || || || |||||||||||| |||| ||| || |||| |||| Sbjct 31744 GACCTTGATCTTTTGAGAAGGGTTCGAGTAAGAGCATGCCTGTCGGGTCCAGAAATATGG 31803 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||| ||||||||| |||||||||| ||||||||||||||| ||| ||| || | | Sbjct 31804 TGAATTATGCCTGAGCGAGGTGAAGCCAAAGGAAACTCTGGTGG-GGCCGGCAACGATAC 31862 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||||||||| ||||| ||||||||||||||| ||| Sbjct 31863 TAACGTGCAAATCGTTCGTCTAATTTGGGTATAGGGTCGA 31902 >seq5693 Length=21445 Score = 150 bits (166), Expect = 7e-34 Identities = 142/180 (79%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 505 TGAGGGT-GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGC 563 ||||||| ||||| ||||||| | | || | | || || || ||| ||||||| Sbjct 616 TGAGGGTTGCACCGCCGACCGACCTTAATCTTATGAGAAGGGTTCCAGTGAGAGCATGCA 675 Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||| | ||| |||||||||||||||||||||||| ||| |||| ||||||||||||| Sbjct 676 TGTCGAGACTCGAAAGATGGTGAACTATGCCTGAGCGGGGCAAAGCTAGAGGAAACTCTG 735 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| |||| | || |||||||||| ||||| | |||||||||||||||| Sbjct 736 GTGGAGGCTCGTAGCGATACTAACGTGCAAATCATTCGTCTCACTTGGGTATAGGGGCGA 795 Score = 91.5 bits (100), Expect = 6e-16 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106 |||||||||||||||||| |||| ||| |||||| || || |||||||| |||| Sbjct 163 GTTGTTTGGGAATGCAGCCCTAATCGGGCTATAAATTG--TCCAAGGCTAAATACAGGCC 220 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 | |||||||||| |||| || || ||||||||||||| |||| |||| || | Sbjct 221 AAAGACCGATAGAAAACAACTACTACGAGTGAAAGATGAAAAGGACTTCAAAAAGTGAAT 280 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 ||| || ||||||||| | || ||||| Sbjct 281 CAAAGAGTGTTTGAAATTGTCGGGAGAGAAGC 312 >seq4383 Length=29509 Score = 145 bits (160), Expect = 3e-32 Identities = 141/180 (78%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 505 TGAGGGT-GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGC 563 ||||||| ||||| ||||||| | | || | | || || || ||| ||||||| Sbjct 6217 TGAGGGTTGCACCGCCGACCGACCTTAATCTTATGAGAAGGGTTCCAGTCAGAGCATGCA 6276 Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||| | ||| | |||||||||||||||||||||| ||| |||||||||||||||| || Sbjct 6277 TGTCGAGACTCAAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTTTG 6336 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| || |||| | || |||||||||| ||||| | |||||||||||||||| Sbjct 6337 GTGGAGGCCCGTAGCGATACTAACGTGCAAATCATTCGTCTCACTTGGGTATAGGGGCGA 6396 Score = 78.8 bits (86), Expect = 4e-12 Identities = 90/121 (74%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 78 TAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCG 137 ||||||| || || |||||||| ||| | |||||||||| | ||||| | | | Sbjct 5792 TAAATTTTGTCCAAGGCTAAATACAGGCGAAAGACCGATAGAAAAAAAGTACTGCAAGTG 5851 Query 138 AAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 |||||||||||| |||| ||||||| | ||| || | ||||||||||| || |||| Sbjct 5852 AAAGATGAAAAGGACTTCAAAAAGAGAATCAAAGAGTGCTTGAAATTGTTGGGAGAGAAG 5911 Query 198 C 198 | Sbjct 5912 C 5912 >seq3685 Length=50081 Score = 107 bits (118), Expect = 8e-21 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 46 AGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGC 105 |||||||||||||||||| | || ||| | |||||| || || |||||||| | Sbjct 20127 AGTTGTTTGGGAATGCAGGCCCAATCGGGCGATAAATTATGTCCAAGGCTAAATACGAGT 20068 Query 106 CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 ||||||||| || |||||| |||| |||||| |||| |||||| |||||||| Sbjct 20067 GAGAGACCGACAGTAAACAAGTGCTGTGAAGGAAAGAACAAAACGACTTTGAAAAGAGAG 20008 Query 166 TTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | || || | |||||||||||| ||||||||| Sbjct 20007 TAAATGAGTGCTTGAAATTGTTGAGAGGGAAGCG 19974 >seq511 Length=1429300 Score = 84.2 bits (92), Expect = 9e-14 Identities = 139/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATC-TATGCGAGTGTTTGGGTG-TCAAA 465 ||||||||| ||||| |||||| |||||||||| | ||||||| || | | ||| Sbjct 804329 CCCGTCTTGAAACACAGACCAAAGAGTCTAACAAAGTGTGCGAGTCAACAGGCGATTAAA 804270 Query 466 CCCGTGCGC-GTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCGAC 522 ||| | | |||| ||| | ||| | | |||| ||| | |||||| | || |||| Sbjct 804269 CCCATAAGGTGTAAGGAAGCT-AACTG--GCGGGATCCCTTTGAGGGTTGTACAGCCGAC 804213 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||||| |||| | || || || || | || ||||||| ||| |||||| |||||| Sbjct 804212 CGATCTTGATCTTTTGAGAAGGGTTCGGGTGAGAGCATGCATGTCGGGACCAAAAAGATA 804153 Query 583 GTGAACTATGCC 594 |||||||||||| Sbjct 804152 GTGAACTATGCC 804141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079782325400