Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq5281 244 3e-62 seq1978 235 2e-59 seq230 80.6 8e-13 >seq5281 Length=5565 Score = 244 bits (270), Expect = 3e-62 Identities = 253/329 (77%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 168 TGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||| |||| ||| | || || || |||| |||||||||||||||| ||||||||||| Sbjct 4019 TGGCTGTCATCAATTGTTGCTGTAAGGTGTTTGGTTAAGTCCCGCAACAAGCGCAACCCT 4078 Query 228 TAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGA 287 | |||||||||| | ||||||| || || || || ||||||| |||| || |||| Sbjct 4079 CGTGTTTAGTTGCCACCGTTAAGTTTGGAACCCTGAGCAGACTGCCCGTGATAAGTCGGA 4138 Query 288 GGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTA 347 |||||||| ||| ||| |||| ||||||||||||||||| | ||| || ||||||||| Sbjct 4139 GGAAGGTGAGGATGACATCAAGTCATCATGCCCCTTATGCCCTAGGCGACGCACGTGCTA 4198 Query 348 CAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTC 407 |||||| | |||||||| | || | ||||||| ||| || ||| ||| || | Sbjct 4199 CAATGGCCGGGACAAAGGGTTGTGATCCTGCGAGGT-GAGCTAACTCCAAAAACCCGTCC 4257 Query 408 TCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAG 467 || ||||||||||||| |||||||||| ||| ||||| | ||||||||||||||| | Sbjct 4258 TCGGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAATCGAAATCGCTAGTAATCGCCG 4317 Query 468 ATCAG-CATGCTACGGTGAATACGTTCCC 495 |||| ||| |||||||| || |||| Sbjct 4318 GTCAGCCATATGGCGGTGAATTCGCTCCC 4346 >seq1978 Length=51955 Score = 235 bits (260), Expect = 2e-59 Identities = 251/329 (76%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 168 TGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||| |||| ||| || || || || |||| |||||||||||||||| || |||||||| Sbjct 24894 TGGCTGTCATCAACTGTTGCTGTAAGGTGTTTGGTTAAGTCCCGCAACAAGTGCAACCCT 24953 Query 228 TAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGA 287 | |||||||||| | || |||| || || || || ||||||| |||| || |||| Sbjct 24954 CGTGTTTAGTTGCCACCGTTGAGTTTGGAACCCTGAGCAGACTGCCCGTGATAAGTCGGA 25013 Query 288 GGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTA 347 |||||||| ||| ||| |||| ||||||| ||||||||| | || |||||| ||||| Sbjct 25014 GGAAGGTGAGGATGACATCAAGTCATCATACCCCTTATGCCCTAGGTGACACACATGCTA 25073 Query 348 CAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTC 407 |||||| | |||||||| | || | | ||||| ||| || ||| ||| || | Sbjct 25074 CAATGGCCGGGACAAAGGGTTGTGATCCTGTGAGGT-GAGCTAACTCCAAAAACCCGTCC 25132 Query 408 TCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAG 467 || ||||||||||||| |||||||||| ||| ||||| ||||||||||||||||| | Sbjct 25133 TCGGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAATCGGAATCGCTAGTAATCGCCG 25192 Query 468 ATCAG-CATGCTACGGTGAATACGTTCCC 495 |||| ||| |||||||| ||||||| Sbjct 25193 GTCAGCCATATGGCGGTGAATTCGTTCCC 25221 >seq230 Length=313697 Score = 80.6 bits (88), Expect = 8e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||||||| || |||||||||||||||||||| ||| |||||| ||| Sbjct 241468 ACAGGTGTTGCATGGTTGTTGTAAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAAC 241527 Query 216 GAGCGCAACCCT 227 |||| ||| || Sbjct 241528 GAGCAAAACTCT 241539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503847374080