Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1275 280 2e-73 seq4383 253 3e-65 seq93 132 8e-29 seq1261 93.3 7e-17 seq627 87.8 3e-15 >seq1275 Length=234140 Score = 280 bits (310), Expect = 2e-73 Identities = 220/260 (85%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 166196 ACTCGTTGAATACATCATTGTAGCGCGCGTGCGGCCCAGAACATCTAAGAGCATCACAGA 166255 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||||||| |||||| | | || |||| | |||||||||||||||||| | Sbjct 166256 CCTGTTATTGCCTCACACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 166313 Query 120 CCACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | | || || |||| |||||||| | ||||||||||||||| |||||| Sbjct 166314 CCGCGGAGGGATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 166373 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166374 TAACCAGACACATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 166433 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 166434 GAAAGAGCTCTCAGTCTGTC 166453 >seq4383 Length=29509 Score = 253 bits (280), Expect = 3e-65 Identities = 208/248 (84%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 3552 TCAGTGTAGCATGCGTGCGGCCTAGAACATCTAAGGGCATCATAGACCTGTTATTGCCTC 3493 Query 76 AAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 ||||||| | | || |||| | ||||||||| |||||||| | | | | || | Sbjct 3492 CAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTTTAAGAAGCTGGTCGCGGAGG-TA-T 3437 Query 134 CGATGGG---GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | |||| |||||||| | ||||||||||||||| |||||||||||||||||| Sbjct 3436 CCTTCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAA 3377 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 3376 TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTCTC 3317 Query 251 AATCTGTC 258 | | |||| Sbjct 3316 AGTGTGTC 3309 >seq93 Length=380271 Score = 132 bits (146), Expect = 8e-29 Identities = 90/101 (89%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 154 TTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGC 213 || ||||||| ||||||| | ||||||||||||||||||||||||||| ||||| ||| Sbjct 287966 TTGAGGTCTCATTCGTTAACAAAATTAACCAGACAAATCACTCCACCAATTAAGAGCGGT 287907 Query 214 CATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||| ||||||||||||||||||||| ||| || Sbjct 287906 CATGCACCACCATCCATAGAATCAAGAAAGAGCTCTCAGTC 287866 >seq1261 Length=173293 Score = 93.3 bits (102), Expect = 7e-17 Identities = 72/82 (88%), Gaps = 4/82 (5%) Strand=Plus/Minus Query 28 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTG 87 |||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||| Sbjct 42377 GCGTGCGGCCCAGAACATTTAAGGGCATCACTGACCTATTATTGCCTCAAACTTCC-TTG 42319 Query 88 GCTGGAAGC--CAATAGTCCCT 107 | | |||| | ||||||||| Sbjct 42318 G-TCTAAGCGGCCATAGTCCCT 42298 >seq627 Length=319257 Score = 87.8 bits (96), Expect = 3e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||| ||| |||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 61646 TCAGTGTACAGCGTGTGCGGCCCAGAACATCTAAGGACATCACAGACTTGTTATTGCCTC 61705 Query 76 A 76 | Sbjct 61706 A 61706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796721667588