Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq735 132 5e-29 seq1275 118 1e-24 seq93 118 1e-24 seq4383 102 8e-20 >seq735 Length=461690 Score = 132 bits (146), Expect = 5e-29 Identities = 141/181 (78%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| ||| Sbjct 19497 CTATTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTAGATACATTAGCAT 19556 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||||| | |||||| | ||||| |||| | | || | ||| || ||||||| Sbjct 19557 GGAATAACATCATAGGATTT-CGGTTTTATTCTATTGGCCTTCGGGATCGAA-GTAATGA 19614 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | |||||||||||| ||| |||| || |||||||||||||||||| ||||| Sbjct 19615 TTAACAGGGATAGTCGGGGCGTTCA-TATTTCATAGTCAAAGGTGAAATTCTTAAATTTA 19673 Query 190 T 190 | Sbjct 19674 T 19674 >seq1275 Length=234140 Score = 118 bits (130), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 166944 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 166885 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | ||| || | |||| ||||| ||| || | ||| || ||||||| Sbjct 166884 GGGATAACATCATAAGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGAA-GTAATGA 166827 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| | ||||||| | ||||| || |||| |||||||||||| ||||||| Sbjct 166826 TTAACAGGGACACTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTCGGATTTA 166767 Query 190 T 190 | Sbjct 166766 T 166766 >seq93 Length=380271 Score = 118 bits (130), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || || ||||||| |||||||| | |||||||| |||| |||| |||||||||| ||| Sbjct 287363 CTATTGCTTTGAAGAAATTAGAAGGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 287422 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||| | Sbjct 287423 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGAA-GTAATAA 287480 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | | | ||| ||||| | ||||| ||||||| |||||||||||||||||||| Sbjct 287481 TTAACAGGTACAGTTGGGGGCATTCGTATTTCATTGTCATAGGTGAAATTCTTGGATTTA 287540 Query 190 T 190 | Sbjct 287541 T 287541 >seq4383 Length=29509 Score = 102 bits (112), Expect = 8e-20 Identities = 127/169 (75%), Gaps = 5/169 (3%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| ||||||||||||| |||| | |||||||| ||| Sbjct 2851 CTATTACTTTGAAGAAATTAGAGTACTCAAAGCAGGCCTACGCTCTGGATACATTAGCAT 2910 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGG-TTTCTAGGACCGCCCGTAATG 128 || |||| | |||||| | |||| ||| | | | || ||| || | | |||||| Sbjct 2911 GGGATAACATCATAGGA-TTTCGGTCCTAATCTATTGGCCTTCGAGATCAG--AGTAATG 2967 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || || | ||||||||||||| | ||||| || |||| |||||||| Sbjct 2968 ATTAACAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 3016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511949665920