Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1275 286 7e-75 seq4383 237 3e-60 seq627 212 1e-52 seq385 111 3e-22 seq1261 91.5 3e-16 seq6171 78.8 2e-12 seq3685 78.8 2e-12 >seq1275 Length=234140 Score = 286 bits (316), Expect = 7e-75 Identities = 224/264 (85%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||| ||||||||||||||| Sbjct 166314 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTGTGAGGCAATAACAGG 166256 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||| ||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct 166255 TCTGTGATGCTCTTAGATGTTCTGGGCCGCACGCGCGCTACAATGATGTATTCAACGAGT 166196 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 166195 CTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 166137 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||| ||||||| ||||||||||||| ||||||||| |||| Sbjct 166136 TCATTGCAATTGTTGGTCTTCAATGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 166077 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| ||||||||||||||| Sbjct 166076 TTGACTACATCCCTGCCCTTTGTA 166053 >seq4383 Length=29509 Score = 237 bits (262), Expect = 3e-60 Identities = 212/261 (81%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 68 CCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 || |||||||| ||||||||| | ||| | ||| | ||||||| ||||||||||||||| Sbjct 3449 CCAGCTTCTTAAAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTGGAGGCAATAACAGGT 3507 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 || ||||||||||||||||||| |||||||||| |||||||||| | ||| || | Sbjct 3508 CTATGATGCCCTTAGATGTTCTAGGCCGCACGCATGCTACACTGATGTATTCAATGAATC 3567 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||| || | |||||||||| | ||| | || || |||||||||| Sbjct 3568 TATAGCCTTGGCCGACAGC-CGGGGTAATCTT-TGAAATTTCATCATGATGGGGATAGAT 3625 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| |||| || ||||||| ||||| ||||||| ||||||||| ||||| Sbjct 3626 CATTGCAATTGTTGGTCTTTAAGGAGGAATTCCTAGAAAGCGCGAGTCATCAGCTCGCGT 3685 Query 306 TGATTACGTCCCTGCCCTTTG 326 ||| ||||||||||||| ||| Sbjct 3686 TGACTACGTCCCTGCCCCTTG 3706 >seq627 Length=319257 Score = 212 bits (234), Expect = 1e-52 Identities = 179/219 (82%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 110 TGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 ||||||||||||| |||||||||| |||||||||||||||||||||| ||| ||||||| Sbjct 61706 TGAGGCAATAACAAGTCTGTGATGTCCTTAGATGTTCTGGGCCGCACACGCTGTACACTG 61647 Query 170 ACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT 229 | | |||| ||| || | || |||| ||| ||||||||||| | ||| | | Sbjct 61646 ATGTATTCAACAAGTCTATAGCTTTAGCCGATAGGCTTGGGTAATCTT-TGAAATTTCAT 61588 Query 230 CGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCG 289 ||| |||||||| | ||||| |||| ||| ||||||||||||||| ||||||||||||| Sbjct 61587 TGTGATGGGGATAAATCATTGTAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCG 61528 Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| | |||||||| || |||||||||||||||| Sbjct 61527 AGTCATCAACTCGCGTTGACTATGTCCCTGCCCTTTGTA 61489 >seq385 Length=726794 Score = 111 bits (122), Expect = 3e-22 Identities = 125/166 (75%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCT 193 |||||||||| || || | || | |||||||||||| | ||||||| || | | Sbjct 721065 CCCTTAGATGCCCTAGGACACATGTGCGCTACACTGATGTATTGAACGAGTCTATAGCAT 721124 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 |||||| || || ||||||||| | ||| | ||||| | ||||||| |||||||| Sbjct 721125 TGGCCGATAGCCCTAGGTAATCTT-TGAAATTTCATCGTGATTAGGATAGATCATTGCAA 721183 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 || ||| ||||||| ||||||| |||| ||| ||| ||||||||| Sbjct 721184 TTGTTGGTCTTCAATGAGGAATTCCTATTAAACGCTAGTCATCAGC 721229 >seq1261 Length=173293 Score = 91.5 bits (100), Expect = 3e-16 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| | | | || | | |||||||||||||||||| ||||| ||||||||||| Sbjct 42298 AGGGACTATGGCCGCTTAGACCAAGGAAGTTTGAGGCAATAATAGGTCAGTGATGCCCTT 42357 Query 139 AGATGTTCTGGGCCGCACGC 158 | |||||||||||||||||| Sbjct 42358 AAATGTTCTGGGCCGCACGC 42377 >seq6171 Length=4904 Score = 78.8 bits (86), Expect = 2e-12 Identities = 96/130 (74%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||| |||| ||| ||||||||||||||||| || |||| | |||||||||| | Sbjct 4300 CAATAAAAGGTACGTGGTGCCCTTAGATGTTCTGAGCTGCACATGTGCTACACTGATGTA 4359 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 |||||||| || |||||||| | | | || ||||||| | ||| | | || Sbjct 4360 TTCAACGAGTCTATAGCCTTGGCCTACATGCCAGGTTAATCTT-TGAAATTTCATTATGA 4418 Query 235 TGGGGATAGA 244 |||||||||| Sbjct 4419 TGGGGATAGA 4428 >seq3685 Length=50081 Score = 78.8 bits (86), Expect = 2e-12 Identities = 96/130 (74%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||| |||| ||| ||||||||||||||||| || |||| | |||||||||| | Sbjct 21297 CAATAAAAGGTACGTGGTGCCCTTAGATGTTCTGAGCTGCACATGTGCTACACTGATGTA 21238 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 |||||||| || |||||||| | | | || ||||||| | ||| | | || Sbjct 21237 TTCAACGAGTCTATAGCCTTGGCCTACATGCCAGGTTAATCTT-TGAAATTTCATTATGA 21179 Query 235 TGGGGATAGA 244 |||||||||| Sbjct 21178 TGGGGATAGA 21169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947103878144