Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1275 558 1e-156 seq4383 464 2e-128 seq93 369 1e-99 seq244 201 3e-49 >seq1275 Length=234140 Score = 558 bits (618), Expect = 1e-156 Identities = 437/513 (85%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| | | |||||| |||| |||||||||||||||||| Sbjct 167167 GTACTCATTCCAATTACCGGACTCTAT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 167225 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 167226 TCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGTCGTT 167285 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||||| Sbjct 167286 TCTCAGGCTCCCTCTCCGGAATCGAACCCTACTTCTCCGTCACCCGTCACCACCATGGTA 167345 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||| |||||||||||||||||||||| |||||||||| | |||| || Sbjct 167346 GGCCACTATCCTATCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTCGCTAGCA 167405 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | | ||| |||||| || |||||| |||||||| || |||| | | || | Sbjct 167406 CGATGGCTGTGCGATCTGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 167463 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 167464 CGTCAGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 167523 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 167524 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGATACCATCAAACAAACTATAACTGA 167582 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 167583 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 167642 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 167643 TAATCTTTGAGACAAGCATATGACTACTGGCAG 167675 >seq4383 Length=29509 Score = 464 bits (514), Expect = 2e-128 Identities = 416/513 (81%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| ||||||||||||| |||| | |||| | |||| |||||||||| |||||| Sbjct 2629 GTAGTCATTCCAATTACCAGACTTTAT-GAGCTCGGTATTGTAATTTATTGTCCCTACCT 2571 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||| || ||||||||||||||| ||||||| |||||||||| ||||||||||| ||| Sbjct 2570 CCCCGTATCAGGATTGGGTAATTTGTGCGCCTGTTGCCTTCCTTAGATGTGGTAGCAGTT 2511 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||| |||| |||| |||||| | | |||||| ||||||||| Sbjct 2510 TCTCAGGCTCCCTCTCCGAAATCAAACCATAATTCTCTATCACCCGTCACAACCATGGTA 2451 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||| ||||||||||||||||||||||| | |||||||||| ||||||| Sbjct 2450 GGCCACTATCTTACCATCGAAAGTTGATAGGGCAAATATTTGAATGATGCATCGCCAAAA 2391 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGG---- 293 | | || ||| || || |||| | |||||||| || |||| ||| || | Sbjct 2390 CGATGGATGTGCAATCTGTCGAGTTGTCATGAATCATCA--GAGCAACGAGCAGAGCCTA 2333 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| |||| Sbjct 2332 CGTCAGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACATATT 2273 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| || | || ||| |||||| ||| |||||||| Sbjct 2272 AGCTCTAGAATTACTACGGTTATCCGAGT-GGCAGATACCATCAAACGAACTATAACTGA 2214 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCT 471 |||||||||||||| |||||||||| || | || | | | ||||||| | ||||||||| Sbjct 2213 TTTAATGAGCCATTTGCAGTTTCACAGTCTGAGTTAGTTCATACTTACAAATGCATGGCG 2154 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 2153 TAATCTTTGAGACAAGCATATGACTACTGGCAG 2121 >seq93 Length=380271 Score = 369 bits (408), Expect = 1e-99 Identities = 389/512 (76%), Gaps = 49/512 (10%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || || ||||||||||| |||| | | ||||| | || |||||||||||||||||| Sbjct 287181 GTTCTTATTCCAATTACTAGACTCTAT-GAGCCGGGCATTGTTATTTATTGTCACTACCT 287123 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | |||||| ||||| |||||||||||| |||||| |||||||||| ||||||||||||| Sbjct 287122 CTCCGTGTTAGGATTAGGTAATTTGCGCACCTGCTACCTTCCTTGGGTGTGGTAGCCGTT 287063 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 | ||| ||||||||||||||||||||||||||||| |||| |||||| ||||||| | Sbjct 287062 TGTCACGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGGA 287003 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| |||| ||||||| |||| | | Sbjct 287002 GGCCATTATCATACCATC-----------------------------ACCAGCACG---- 286976 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGGC---- 294 | ||| ||| || ||| ||||| | | ||||||||| |||| || || || Sbjct 286975 -ATGGCTGTGCAATCCGTCAAGTTGTCACGAATCACCA--GAGCAACGGGCAGAGCCCAC 286919 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 ||| | ||||||||||||||| || ||||||| ||||| ||||||| | ||| ||||| Sbjct 286918 GTTAGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTAGGGGTTTGTTGCACATATTA 286859 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 ||| ||||||||| |||||||||| |||||| ||| |||||| |||| ||||||||| Sbjct 286858 GCTTTAGAATTACTACGGTTATCCGAGTAGTATA-TACCATCAAACAAACTATAACTGAT 286800 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTT 472 ||||||||| || ||||||||| || | || | | | ||||||| ||||||||||||| Sbjct 286799 TTAATGAGCAAT---CAGTTTCACAGTCTGAGTTAGTTCATACTTACACATGCATGGCTT 286743 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| || Sbjct 286742 AATCTTTGAGACAAGCATATGACTACTGGTAG 286711 >seq244 Length=134009 Score = 201 bits (222), Expect = 3e-49 Identities = 232/304 (76%), Gaps = 25/304 (8%) Strand=Plus/Minus Query 208 TAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATT 267 ||||||||| |||||||||| | ||||| || ||| || ||| |||||| Sbjct 65991 TAGGGCAGATATTTGAATGATGCGTCGCCAGC--------ATG--ATCCGTCGAGTTATC 65942 Query 268 ATGAATCACCAAGGAGCCCCGA--AGGGCGTTGGTT----TTTTATCTAATAAATACACC 321 |||||||| || |||| | || || | | |||||| || ||||| || | Sbjct 65941 ATGAATCATCA--GAGCAATGGGTAGAGCCCTCATCAGCCTTTTATTTAGTAAATGCATC 65884 Query 322 CCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG 380 | |||| ||||| |||||| | ||| |||||||||||||||||| | |||||||| | Sbjct 65883 CGTTCCACAAGTCAGGGTTTGTTGCACATATTAGCTCTAGAATTACTATGGTTATCCGAG 65824 Query 381 TAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 ||||| | || |||||| |||| ||||| |||||||||||||||||| |||||||| || Sbjct 65823 TAGTA-GATATCATCAAACAAACTATAACAGATTTAATGAGCCATTCGTAGTTTCACAGT 65765 Query 441 ATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTG 500 ||| | |||| |||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 65764 -TAGTT--CTTA--CTTACACATGTATGGCTTAATCTTTGAGACAAGCATATGACTACTA 65710 Query 501 GCAG 504 |||| Sbjct 65709 GCAG 65706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510246724608