Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7758 176 4e-39 seq853 172 4e-38 >seq7758 Length=1097 Score = 176 bits (194), Expect = 4e-39 Identities = 400/590 (68%), Gaps = 15/590 (3%) Strand=Plus/Minus Query 61054 CGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA 61112 |||||| |||| |||||| ||| | || ||| || ||| |||||||| ||||| || Sbjct 995 CGTTTCTGTAT-GTTCCCGATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCCGA 937 Query 61113 AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCG 61172 || ||||||||||| | |||||||| ||||| | | | ||| | ||||||| | Sbjct 936 GGCCTCCTTCTGGACCGCCGAGGAGGTTGATTTATGCCAGGACCTACGCCACTGGGAACT 877 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | || | ||| || | || ||||| | || ||| | || ||||| || || || || Sbjct 876 TCTAGCCCCCGGCGAGAAGCACTTCATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGA 817 Query 61233 CGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGC 61292 ||| || || |||||| | | | | ||| | |||| || || || || ||||| Sbjct 816 CGGCATTGTTTTGGAGAATCTCGCCGGAAGGTTCATGAAGGAAGTCCAGGTCTCCGAGGC 757 Query 61293 GCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGT 61352 || ||||||||||||||||| ||||| ||||| ||||||| ||||||||||| | Sbjct 756 TCGAGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCT 697 Query 61353 TCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAAC--GATTGTTCAATGCCA 61408 ||| | || || ||||||| ||| | | || ||| |||| | || ||| |||| | Sbjct 696 CCTCCTGGAGACCTACATCAAGGACTCAGACGAGAA---GAACAGGCTTTTTC-ATGCGA 641 Query 61409 TCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTA 61468 |||| || || || || | | ||| || | |||||| | |||||| | | Sbjct 640 TCGATACCATTCCCTGCGTCACGAAGAAGGCCCAGTGGGCCCTACGCTGGATCGACGGCT 581 Query 61469 CAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC- 61527 || | | |||| || || | |||| ||||| || || || |||| ||| Sbjct 580 CA---GAATCGTTTGCGGAGCGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCT 524 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 | ||| |||| ||| || |||||| | ||||| || || | ||||| || ||||| Sbjct 523 CGGGGAGTTTTTG-CGCGATATTTTGGCTAAAGAAGCGCGGGTTAATGCCTGGACTGACG 465 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||| || |||||||| || || || ||||| |||| || || || || Sbjct 464 TTCTCAAACGAGTTGATCTCGCGAGATGAGGGTTTGCACTGCGACTTCGC 415 >seq853 Length=703183 Score = 172 bits (190), Expect = 4e-38 Identities = 391/579 (68%), Gaps = 13/579 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || ||| || ||| |||||||| ||||| || || ||||||| Sbjct 574121 TGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCT 574062 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||||| ||||| | | | ||| | ||||||| | | || | || Sbjct 574061 GGACCGCCGAGGAGGTTGATTTATGCCAGGACCTACGCCACTGGGAACTTCTAGCCCCCG 574002 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | || ||||| | || ||| | || ||||| || || || ||||| || || Sbjct 574001 GCGAGAAGCACTTCATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATTGTTT 573942 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | | | ||| | |||| || || || || ||||| || |||| Sbjct 573941 TGGAGAATCTCGCCGGAAGGTTCATGAAGGAAGTCCAGGTCTCCGAGGCTCGAGCCTTCT 573882 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 ||||||||||||| ||||| ||||| ||||||| ||||||||||| | ||| | || | Sbjct 573881 ACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTGGAGA 573822 Query 61364 CGTACATCAGGGA-GCGGGCG-GAACGTGAAC--GATTGTTCAATGCCATCGAGACGATA 61419 | ||||||| ||| | | || ||| |||| | || ||| |||| ||||| || || Sbjct 573821 CCTACATCAAGGACTCAGACGAGAA---GAACAGGCTTTTTC-ATGCGATCGATACCATT 573766 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 || || | | ||| || | |||||| | |||||| | | || | | Sbjct 573765 CCCTGCGTCACGAAGAAGGCCCAGTGGGCCCTACGCTGGATCGACGGCTCA---GAATCG 573709 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTT 61538 |||| || || | |||| ||||| || || || |||| ||| | ||| || Sbjct 573708 TTTGCGGAGCGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTT 573649 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 || ||| || |||||| | ||||| || || | ||||| || ||||| ||| || || Sbjct 573648 TG-CGCGATATTTTGGCTAAAGAAGCGCGGGTTAATGCCTGGACTGACGTTCTCAAACGA 573590 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 |||||| || || || ||||| |||| || || || || Sbjct 573589 GTTGATCTCGCGAGATGAGGGTTTGCACTGCGACTTCGC 573551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397518829286720