Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq96 324 2e-83 seq938 109 6e-19 seq960 86.0 7e-12 >seq96 Length=556063 Score = 324 bits (358), Expect = 2e-83 Identities = 521/738 (71%), Gaps = 8/738 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || ||||| |||||||| || |||||||| || |||| ||||| ||| ||| | ||| Sbjct 6962 GACCGTTTTGTTTTTGTAGGTTGGTCTGGCCTATTTCTCTTTCCTTGTGCCTATTTCGCT 7021 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| || || || || || | || ||||||||||||| | | || Sbjct 7022 TTAGGGGGTTGGTCCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGAATTAGCA 7081 Query 161665 AGTTCCTATCTTG-AGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGC 161723 ||||||||| | | ||| || || |||| | || | |||||| |||||| ||| | Sbjct 7082 AGTTCCTATTTGGAAGGCTGTAACTTTT-TAACCGTCGCAGTTTCCACTCCGGCTAATAG 7140 Query 161724 TATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGG 161781 | | | || ||| || || || || ||||||||| | || ||||| || ||| || | Sbjct 7141 TTTAGCACACTCT-TTATTGTTACTATGGGGTCCTAAAGCACAAGGAGACTTTACTC-GT 7198 Query 161782 TGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATT 161841 ||| ||| | || || || |||| |||||| || || || || ||||||| || || Sbjct 7199 TGGTGTCAATTAGGCGGTCTATGGACTTTTGTTGCTCTACATGGCGCTTTCGGACTAATA 7258 Query 161842 GGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGC 161900 || || ||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| Sbjct 7259 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTATTCAAT-TGCGACCTTATAATGC 7317 Query 161901 TATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGG 161960 || || |||||| ||| |||| ||||||||| || || || || ||||| || || Sbjct 7318 AATCGCATTCTCTAGTCGAATTGTTGTTTTTGTTTATGTATTCCTAATTTATCCGCTAGG 7377 Query 161961 ACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACT 162020 |||| ||||| || ||||| ||||| || || ||||| || | ||| | || Sbjct 7378 TCAGTTTGGTTGGTTTTTTGCGCCCAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCT 7437 Query 162021 TTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGG 162080 || | ||||| || || |||||||| | || || || || |||||||| || || || Sbjct 7438 CTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCTGG 7497 Query 162081 TATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTA 162140 | ||||| | |||| || | | ||||||||| |||| ||| | ||||| || | | Sbjct 7498 GGTGTTGGGCGCTGCTCTGTTATGTGCTATTCATGGTGCTACTATAGAAAATACTTTATT 7557 Query 162141 CCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGAC 162200 |||||||||| |||||||| ||| |||||| || | || |||| || || || Sbjct 7558 TGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAAC 7617 Query 162201 TTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAA 162260 ||| || ||||| || | || || || ||||| || ||||| | |||||||| || Sbjct 7618 TTATTCAATGGTCACCACTAATCGCTTTTGGTCCCAAATCTTTAGGGTTGCTTTTTCCAA 7677 Query 162261 TAAGCGTTGGTTGCATTT 162278 ||| ||||||| ||||| Sbjct 7678 TAAATGTTGGTTACATTT 7695 Score = 181 bits (200), Expect = 1e-40 Identities = 198/262 (76%), Gaps = 1/262 (0%) Strand=Plus/Plus Query 162274 CATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATT 162333 |||||||||||| | || || || || | | | | |||| ||| || | || | | Sbjct 8874 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTGTGGATGAGTGCTCTTGGAGTAGTC 8933 Query 162334 GGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAG 162393 || || || || || || ||||| || ||||| || |||||||| || ||||||||||| Sbjct 8934 GGTCTGGCGCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 8993 Query 162394 GATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCA 162453 |||| ||||||||| || ||||||||||| ||||| ||||| ||||||||| ||||||| Sbjct 8994 GATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCT 9053 Query 162454 TGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCT 162513 ||| |||| | ||||| || ||||| ||| || || |||||||||| ||||| || Sbjct 9054 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATAATCCCTGAGGAGGTTCTACCC 9113 Query 162514 AGAGGTAACGCACTGTGAATGG 162535 | || ||||| || | ||||| Sbjct 9114 CGTGGAAACGCTCT-TTAATGG 9134 >seq938 Length=1460269 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 160959 GGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTG 161018 ||||||| || | |||||||| || || || || ||| | ||| ||||||||| || Sbjct 244823 GGATGATGTTTACATTCTTGACGCCGCGGAGGAGGCCGGTATCGACCTACCCTACTCTTG 244882 Query 161019 TCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATC 161078 | |||||| |||||||| | |||||||| || ||| | || ||| || || || Sbjct 244883 CAGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGAAGGGGGTGTGGACCAGTC 244942 Query 161079 TGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138 ||||| ||||| |||||||| || |||| ||||||||||| || || || || Sbjct 244943 AGATCAGAGCTTCCTTGATGATGAACAGATTGATGGTGGATTTGTCCTTACTTGTGTGGC 245002 Query 161139 TTATCCCACTTCTGATGT 161156 |||||| | |||||||| Sbjct 245003 TTATCCTTCATCTGATGT 245020 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 160959 GGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTG 161018 ||||||| || | |||||||| || || || || ||| | ||| ||||||||| || Sbjct 250354 GGATGATGTTTACATTCTTGACGCCGCGGAGGAGGCCGGTATCGACCTACCCTACTCTTG 250413 Query 161019 TCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATC 161078 | |||||| |||||||| | |||||||| || ||| | || ||| || || || Sbjct 250414 CAGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGAAGGGGGTGTGGACCAGTC 250473 Query 161079 TGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138 ||||| ||||| |||||||| || |||| ||||||||||| || || || || Sbjct 250474 AGATCAGAGCTTCCTTGATGATGAACAGATTGATGGTGGATTTGTCCTTACTTGTGTGGC 250533 Query 161139 TTATCCCACTTCTGATGT 161156 |||||| | |||||||| Sbjct 250534 TTATCCTTCATCTGATGT 250551 >seq960 Length=99236 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 162343 CTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAA 162402 || || || | |||||| | |||||| |||||| | |||||||||||| | |||| ||| Sbjct 44607 CTAAACCTACATGCTTATGCCTTTGTTTCTCAGAAAATTCGTGCAGCGAAATATCCAGAA 44666 Query 162403 TTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTG 162459 ||||| || || ||||| || |||| || || || |||| | |||||| ||| || Sbjct 44667 TTTGAGACTTTTTACACTAAAAATAGTCTTTTAAACGAAGATATTCGTGTTTGGATG 44723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551306057954400