Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq381 203 2e-50 seq387 131 9e-29 seq6 120 2e-25 seq7 111 9e-23 seq2 77.0 2e-12 >seq381 Length=12965 Score = 203 bits (224), Expect = 2e-50 Identities = 115/117 (98%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 11887 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAATTGATAACATCGCCC 11946 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 11947 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 12003 >seq387 Length=12500 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || ||||||| || Sbjct 6769 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCC 6710 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| | |||||||||||||||||||| Sbjct 6709 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGCCGGTATCTGATCGTCTTCGA 6653 >seq6 Length=21292200 Score = 120 bits (132), Expect = 2e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCC 59 |||| |||| ||||||||||||| ||||||| || ||||| ||| || |||||| | Sbjct 5778030 GAACTCAAAAACTTTGATTTCTCATAAGGTGTCGGCGGAGTCCTAAAAGA-AACATCCGC 5777972 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| |||||||| ||||| |||| |||||| || ||||||||||||||||||| Sbjct 5777971 CGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGATGGTATCTGATCGTCTTCGA 5777914 >seq7 Length=17044513 Score = 111 bits (122), Expect = 9e-23 Identities = 99/119 (83%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCA-AAATGATAACATCGC 58 ||||||||| ||||||||| ||| ||||||| || |||| ||| ||| || |||||| Sbjct 2453128 GAACCCAAAAACTTTGATTACTCATAAGGTGTCG-GCGAAGTCCTAAAAGA-AACATCCG 2453185 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||||| |||||||| |||| |||| |||||| |||||||||| ||||||||||| Sbjct 2453186 CCTATCCCTGGTCGGCATCATTTATGGTTGAGACTAAGACGGTATCTAATCGTCTTCGA 2453244 >seq2 Length=42086771 Score = 77.0 bits (84), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAG-TCAAAATGATAACATCGCC 59 |||||||| ||||||||||||| | ||||||| ||| ||| || ||| | |||| || | Sbjct 26523676 AACCCAAAAACTTTGATTTCTCATCAGGTGCC-AGCAGAGTTCTAAAAG-TAACTTCCGC 26523733 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTT 114 |||||| | ||| | | |||| |||| |||||| || | ||||| ||| |||| Sbjct 26523734 CGATCCATGGTCAACGTCTTTTATGGTTGAGACTAGGATGTTATCTAATCATCTT 26523788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278378691960