Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4 248 4e-63 seq387 168 3e-39 seq7 161 4e-37 seq172 141 4e-31 seq2 116 2e-23 >seq4 Length=23934096 Score = 248 bits (274), Expect = 4e-63 Identities = 227/282 (80%), Gaps = 5/282 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | | Sbjct 17376672 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGATTA 17376613 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT-GCACCATCGA 521 ||||||| | ||||| ||| ||| || || | ||| ||||||| ||||| ||| Sbjct 17376612 AACCCGTAAGGCGTAAGGAAGCTGACTGGCGG--GATCCCCTTGAGGGTTGCACCGCCGA 17376555 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | | || || || |||| ||||||| |||| |||||||||||||| Sbjct 17376554 CCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGGGACCCGAAAGAT 17376495 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 17376494 GGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 17376435 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 17376434 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 17376393 >seq387 Length=12500 Score = 168 bits (186), Expect = 3e-39 Identities = 183/238 (77%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 447 CGAGTGTTTGGGTG-TCAAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG 504 |||||| ||||| | ||||| ||| | ||||| ||| ||| || || | ||| Sbjct 8807 CGAGTGAACGGGTGATTAAACCTGTGAGGCGTAAGGAAGCTGACTGGCGG--GATCCCCT 8864 Query 505 TGAGGGT-GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGC 563 ||||||| || || ||||||| | |||| | | || || || |||| ||||||| Sbjct 8865 TGAGGGTTGCGCCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCT 8924 Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||| | |||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 8925 TGTCGAGACCCGAAAGATGGTGAACTATGCCTGAGCGAGGCGAAGCCAGAGGAAACTCTG 8984 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||||| ||||||| | ||| ||||||||||| |||| | |||||| ||||||| Sbjct 8985 GTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTTTGACTTGGGTGTAGGGGC 9042 >seq7 Length=17044513 Score = 161 bits (178), Expect = 4e-37 Identities = 204/274 (74%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTCA 463 ||||| |||||| || || ||| ||||||||| |||| | ||||||| ||| | | | Sbjct 2451320 CGGCCTGTCTTGAAA-ACAGACTAAGGAGTCTGACATGTGTGCGAGTCAACGGGCTATAA 2451262 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT-GCACCATCGA 521 |||| || | ||||| ||| ||| || | | ||| | ||||| |||| || Sbjct 2451261 AACCAGTAAGTCGTAAGGAAGCTGACTGGCAG--GATCCCCTTAAGGGTTGCACTGCCGC 2451204 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | | || || ||||||| |||||||| |||| |||||||| ||||| Sbjct 2451203 CCGACCTTGATCTTCTAAGAAGGGTTTGAGTGAGAGCATACCTGTCGGGACCCGGAAGAT 2451144 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||| |||||| || ||| |||| ||||||||||||||||||| | ||| |||| | Sbjct 2451143 GGTGAAATATGCCCGAGCGGGGCGAAGTCAGAGGAAACTCTGGTGGAAGGTCGTAGCGAT 2451084 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 || ||||||||| | ||||| | |||||||| Sbjct 2451083 ATTGACGTGCAAATTGTTCGTCTGACTTGGGTAT 2451050 Score = 93.3 bits (102), Expect = 2e-16 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 |||||||||||||||||||||||| | || || ||||||||| || || ||||||| Sbjct 2451683 AGTCGAGTTGTTTGGGAATGCAGCCCCAATCAGGCGGTAAATTTTGTCCAAGACTAAATA 2451624 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 | |||||| |||| | || | || || || |||||||||||| |||||| ||| Sbjct 2451623 CGAGAGAGAGACTGATACCAAACGAATA-AGCGAGGGAAAGATGAAAATGACTTTGAAAA 2451565 Query 161 GAGAGT 166 |||||| Sbjct 2451564 GAGAGT 2451559 >seq172 Length=36390 Score = 141 bits (156), Expect = 4e-31 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| || || |||||| Sbjct 8833 CGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCTGTCCAAGGCTAAA 8774 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 8773 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 8714 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| ||| || | ||||||||| | ||| ||||| Sbjct 8713 AAGAGAGGAAAAGAGAGCTTGAAATTGTGGGGAGGAAAGCG 8673 >seq2 Length=42086771 Score = 116 bits (128), Expect = 2e-23 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| ||||||||| |||||||||| | || || | | |||||| || || ||||||| Sbjct 26520363 GAGTTGAGTTGTTTAGGAATGCAGCCCCAATTGAGCGATAAATTATGTCCAAGGCTAAAT 26520304 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||| ||| |||| ||||||| |||| ||||| |||| |||||| || Sbjct 26520303 ACGGGCGAGAAACCAATAGTAAACAAGTAATGTGAGGCAAAGAATAAAACGACTTTGAAA 26520244 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 ||||||| ||| | | |||||||||||| |||||||| Sbjct 26520243 AGAGAGTCAAAGAATGCTTGAAATTGTTGAGAGGGAAGC 26520205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079824882200