Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq381 347 2e-93 seq387 289 5e-76 seq172 288 2e-75 seq3 271 1e-70 seq2 226 5e-57 seq7 217 2e-54 >seq381 Length=12965 Score = 347 bits (384), Expect = 2e-93 Identities = 232/257 (90%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11504 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11563 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 11564 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 11622 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| ||| || | |||||||||||||||||| |||||||||| ||||| |||||| Sbjct 11623 ACCCGCCAAAGCGGGCCTGGCTATTTAGCAGGTTAAAGTCTCGTTCGCTATCGCAATTAA 11682 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 11683 GCAGGCAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 11742 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 11743 AGAGCTCTCAATCTGTC 11759 >seq387 Length=12500 Score = 289 bits (320), Expect = 5e-76 Identities = 222/260 (85%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7154 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 7095 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 7094 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 7037 Query 120 CCACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | | || || |||| || ||||| | ||||||||||||||| |||||| Sbjct 7036 CCGCGGAGGGATCCTCCGCATAGCTAGTTCGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 6977 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6976 TAACCCGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 6917 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 6916 GAAAGAGCTCTCAGTCTGTC 6897 >seq172 Length=36390 Score = 288 bits (318), Expect = 2e-75 Identities = 221/259 (85%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9993 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 10052 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 10053 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 10110 Query 120 CCACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | | || || |||| |||||||| ||||||||||||||| |||||| Sbjct 10111 CCGCGGAGGGATCCTCCGCATAGCTAGTTAGCAGGCGGAGGTCTCGTTCGTTAACGGAAT 10170 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10171 TAACCAGACAAAGCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 10230 Query 239 GAAAGAGCTATCAATCTGT 257 ||||||||| ||| ||||| Sbjct 10231 GAAAGAGCTCTCAGTCTGT 10249 Score = 288 bits (318), Expect = 2e-75 Identities = 221/259 (85%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25386 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 25445 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 25446 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 25503 Query 120 CCACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | | || || |||| |||||||| ||||||||||||||| |||||| Sbjct 25504 CCGCGGAGGGATCCTCCGCATAGCTAGTTAGCAGGCGGAGGTCTCGTTCGTTAACGGAAT 25563 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25564 TAACCAGACAAAGCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 25623 Query 239 GAAAGAGCTATCAATCTGT 257 ||||||||| ||| ||||| Sbjct 25624 GAAAGAGCTCTCAGTCTGT 25642 >seq3 Length=24358521 Score = 271 bits (300), Expect = 1e-70 Identities = 218/260 (84%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct 200619 ACTCGTTGAATACATCAGTGTAACGCGTGTGCGGCCCAGAACATCTAAAGGCATCACAGA 200678 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||| | |||||||| | | || |||| | |||||||||||||||||| | Sbjct 200679 CCTGTTATTGCGTTAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 200736 Query 120 CCACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | | || || |||| |||||||| | ||||||||||||||| |||||| Sbjct 200737 CCGCGGAGGGATCCTCTGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 200796 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 200797 TAACCAGACAAATCGCTCCACCAACTAAGAACGGTCATGCACCACCACCCATAGAATCAA 200856 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 200857 GAAAGAGCTCTCAGTCTGTC 200876 >seq2 Length=42086771 Score = 226 bits (250), Expect = 5e-57 Identities = 205/257 (80%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||| | | || ||| ||| |||||||||||||||||||||||| Sbjct 26523290 ACTCGTTGAATACATCAGTGCAACACGTGTGTGGCTCAGAACATCTAAGGGCATCACAGA 26523349 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||| ||||||||| ||| |||| | | || | | | |||||||||||||||||| | || Sbjct 26523350 CCTATTATTGCCTAAAAATTCCTTAGCCTAGGTGACCATAGTCCCTCTAAGAAGCTAACC 26523409 Query 122 ACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | | || || | |||| ||||||| ||||||||| ||| ||| ||||||| Sbjct 26523410 GCGGAGGGATCCTCCTTATAGCTAGTTAGCAGACTAAGGTCTCATTCATTAATGGAATTA 26523469 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 || ||||||||| |||||||||||||||||| ||||||| ||||||| ||||||| |||| Sbjct 26523470 ACTAGACAAATCGCTCCACCAACTAAGAACGACCATGCATCACCACCTATAGAATAAAGA 26523529 Query 241 AAGAGCTATCAATCTGT 257 ||||||| ||| ||||| Sbjct 26523530 AAGAGCTCTCAGTCTGT 26523546 >seq7 Length=17044513 Score = 217 bits (240), Expect = 2e-54 Identities = 198/246 (80%), Gaps = 14/246 (6%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||| ||| Sbjct 2452766 TCAGTGTAGTGCGCGTGTGGCCCAGCACATCTAAGGGCATCACATACCTGTTATTGACTC 2452825 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG 132 |||||||| |||||| | ||||| |||||||||||||||| ||| | | || Sbjct 2452826 AAACTTCC-TTGGCTTAAGCAGCCA-TAGTCCCTCTAAGAAGTTGGCCGCGGAGGGATCC 2452883 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 || | |||| || ||||| ||||||| ||||| |||||||||||||||| Sbjct 2452884 TCCACATAGCTAGTTTGCAGGATAAGGTCACGTTC---------ATTAACCAGACAAATC 2452934 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||| | | Sbjct 2452935 GCTCCACCAACTAAGAACGGTCATGCATCACCATCCATATAATCAAGAAAGAGCTCTTAG 2452994 Query 253 TCTGTC 258 |||||| Sbjct 2452995 TCTGTC 2453000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796736982084